Halodesulfovibrio oceani subsp. oceani (DSM 21390, JCM 15970, I.8.1)

Name: Halodesulfovibrio oceani subsp. oceani (DSM 21390, JCM 15970, I.8.1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4175

Type strain

Strain Designation I.8.1

Culture col. no. DSM 21390 JCM 15970 I.8.1

NCBI tax ID(s) 983975 613183

Special Collections DSMZ JCM Literature strains

History DSMZ <- K. Finster, Århus Univ., Denmark; I.8.1 <- K. Finster {2007} JCM <-- K. Finster I.8.1.

Links

Halodesulfovibrio oceani subsp. oceani I.8.1 is an anaerobe, vibrio-shaped bacterium that was isolated from sea water at 400 m depth, oxygen minimum zone.

vibrio-shaped anaerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 406211

JCM 15970,DSM 21390

@ref 20215

Last LPSN update 2026-05-29 08:25:52

Domain Bacteria

Phylum Thermodesulfobacteriota

Class Desulfovibrionia

Order Desulfovibrionales

Family Desulfovibrionaceae

Genus Halodesulfovibrio

Species Halodesulfovibrio oceani subsp. oceani

Full scientific name Halodesulfovibrio oceani subsp. oceani (Finster and Kjeldsen 2012) Shivani et al. 2017

Synonyms (1)

Desulfovibrio oceani subsp. oceani

Morphology

Cell morphology

@ref	Cell length	Cell width	Cell shape
25150	1.0-1.5 µm	0.3 µm	vibrio-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15669	MARIDESULFOVIBRIO MEDIUM (DSMZ Medium 1040)		Medium recipe at MediaDive	Name: MARIDESULFOVIBRIO MEDIUM (DSMZ Medium 1040) Composition: Sea Salt 34.9301 g/l Na-DL-lactate 2.49501 g/l Yeast extract 0.998004 g/l Na2CO3 0.998004 g/l Na2S x 9 H2O 0.299401 g/l MgSO4 x 7 H2O 0.0299401 g/l NaCl 0.00998004 g/l MnSO4 x H2O 0.00499002 g/l (NH4)2Ni(SO4)2 x 6 H2O 0.00279441 g/l CoCl2 x 6 H2O 0.00179641 g/l ZnSO4 x 7 H2O 0.00179641 g/l FeSO4 x 7 H2O 0.000998004 g/l CaCl2 x 2 H2O 0.000998004 g/l Sodium resazurin 0.000499002 g/l AlK(SO4)2 x 12 H2O 0.000179641 g/l Pyridoxine hydrochloride 9.98004e-05 g/l CuSO4 x 5 H2O 9.98004e-05 g/l Na2SeO4 9.98004e-05 g/l Na2WO4 x 2 H2O 9.98004e-05 g/l Na2MoO4 x 2 H2O 9.98004e-05 g/l H3BO3 9.98004e-05 g/l Riboflavin 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Thiamine HCl 4.99002e-05 g/l Folic acid 1.99601e-05 g/l Biotin 1.99601e-05 g/l Vitamin B12 9.98004e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
15669	positive	growth	20
25150	positive	optimum	20
25150	positive	growth	4.0-30.0
67770	positive	growth	20

Culture pH

@ref	Ability	Type	PH	PH range
25150	positive	optimum	7.0-8.0
25150	positive	growth	6.0-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
15669	anaerobe
25150	obligate anaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25150	NaCl		optimum	2.5-3.5 %(w/v)
25150	NaCl	positive	growth	0.1-4.0 %(w/v)

Observation

67770

Observationquinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25150	30089 ChEBI	acetate	-	electron donor
25150	35391 ChEBI	aspartate	-	electron donor
25150	16150 ChEBI	benzoate	+	electron donor
25150	15356 ChEBI	cysteine	+	electron donor
25150	5291 ChEBI	gelatin	-	hydrolysis
25150	17754 ChEBI	glycerol	+	electron donor
25150	17822 ChEBI	serine	+	electron donor
25150	17359 ChEBI	sulfite	+	electron acceptor
25150	27897 ChEBI	tryptophan	-	energy source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
25150	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
25150	35581 ChEBI	indole	-

Enzymes

@ref	Value	Activity	Ec
25150	catalase	+	1.11.1.6
25150	tryptophan deaminase	-	4.1.99.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
15669	sea water at 400 m depth, oxygen minimum zone	off coast	Peru	PER	Middle and South America	-13.8753	-76.7731 -13.8753/-76.7731
67770	Oxygen minimum zone water column off the Peru at water depths of 400 and 500 m

Taxonmaps

69479

Global distribution of 16S sequence FJ655907 (>99% sequence identity) for Halodesulfovibrio from Microbeatlas

Aquatic Samples	4673
Soil Samples	122
Animal Samples	387
Plant Samples	54
Total Samples	5236

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15669	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15669	Desulfovibrio oceani subsp. oceani strain I.8.1 16S ribosomal RNA gene, partial sequence	FJ655907	1408		613183

GC content

@ref	GC-content (mol%)	Method
15669	45.1
25150	45.1-45.9	high performance liquid chromatography (HPLC)
67770	45.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Desulfovibrio oceani subsp. oceani sp. nov., subsp. nov. and Desulfovibrio oceani subsp. galateae subsp. nov., novel sulfate-reducing bacteria isolated from the oxygen minimum zone off the coast of Peru.	Finster KW, Kjeldsen KU.	Antonie Van Leeuwenhoek	10.1007/s10482-009-9403-y	2010

References

#15669	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21390
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25150	Y. S. Shivani, Y.,Sasikala, C.,Ramana, C. V.: Halodesulfovibrio spirochaetisodalis gen. nov. sp. nov. and reclassification of four Desulfovibrio spp. IJSEM 67: 87 - 93 2017 ( DOI 10.1099/ijsem.0.001574 , PubMed 27902290 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Halodesulfovibrio oceani subsp. oceani (DSM 21390, JCM 15970, I.8.1)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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