Name: Desulfovermiculus halophilus 11-6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4045

Type strain:

Species: Desulfovermiculus halophilus

Strain Designation: 11-6

Culture col. no.: DSM 18834, VKM B-2364

Strain history: <- E. V. Belyakova, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; 11-6

NCBI tax ID(s): 1121433 (strain), 339722 (species)

SI-ID 297636

DSM 18834, VKM B-2364

Section

Desulfovermiculus halophilus 11-6 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from highly mineralized stratal water of an oil field.

Gram-negative
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfohalobiaceae*
	Genus	*Desulfovermiculus*
	Species	**Desulfovermiculus halophilus**
	Full Scientific Name (LPSN)	Desulfovermiculus halophilus Belyakova et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.996

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7730]

Culture medium

DESULFOHALOBIUM UTAHENSE MEDIUM (DSMZ Medium 1055)

[Ref.: #7730]

Culture medium growth

[Ref.: #7730]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7730]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7730]			growth	37 °C

[Ref.: #7730]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7730]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.917

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7730]	Sample type/isolated from	highly mineralized stratal water of an oil field
[Ref.: #7730]	Geographic location (country and/or sea, region)	Volgo-Ural Region
[Ref.: #7730]	Country	Russia
[Ref.: #7730]	Country ISO 3 Code	RUS
[Ref.: #7730]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Oil reservoir
#Environmental	#Aquatic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ139408 (>99% sequence identity) for Desulfovermiculus halophilus subclade from Microbeatlas

Aquatic Samples	51
Soil Samples	3
Animal Samples
Plant Samples
Total Samples	54

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7730]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7730]	Desulfovermiculus halophilus strain 11-6 16S ribosomal RNA gene, partial sequence	DQ139408	1424	ENA	339722 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfovermiculus halophilus DSM 18834	GCA_000620765	scaffold	GenBank	1121433 tax ID	*
[Ref.: #66792]	Desulfovermiculus halophilus DSM 18834	1121433.3	wgs	PATRIC	1121433 tax ID	*
[Ref.: #66792]	Desulfovermiculus halophilus DSM 18834	2556921618	draft	JGI IMG/M	1121433 tax ID	*

[Ref.: #7730]

GC-content

55.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfovermiculus halophilus DSM 18834 DSM 18834 NCBI: GCA_000620765.1
[Ref.: #69481]	spore-forming	yes	60	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfovermiculus halophilus DSM 18834 DSM 18834 NCBI: GCA_000620765.1
[Ref.: #69480]	motile	no	84.583	no
[Ref.: #69480]	flagellated	no	97.34	no
[Ref.: #69480]	gram-positive	no	99.188	no
[Ref.: #69480]	anaerobic	yes	99.551	yes
[Ref.: #69480]	halophile	yes	54.651	no
[Ref.: #69480]	spore-forming	no	94.146	no
[Ref.: #69480]	thermophile	no	70.62	no
[Ref.: #69480]	glucose-util	no	62.134	no
[Ref.: #69480]	aerobic	no	97.685	yes
[Ref.: #69480]	glucose-ferment	no	85.387	no

Availability in culture collections External links

[Ref.: #7730]

Culture collection no.

DSM 18834, VKM B-2364

[Ref.: #73550]

SI-ID 297636

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	[The new facultatively chemolithoautotrophic, moderately halophilic, sulfate-reducing bacterium Desulfovermiculus halophilus gen. nov., sp. nov., isolated from an oil field].	Beliakova EV, Rozanova EP, Borzenkov IA, Turova TP, Pusheva MA, Lysenko AM, Kolganov TV	Mikrobiologiia		2006	*
Phylogeny	Desulfohalobium utahense sp. nov., a moderately halophilic, sulfate-reducing bacterium isolated from Great Salt Lake.	Jakobsen TF, Kjeldsen KU, Ingvorsen K	Int J Syst Evol Microbiol	10.1099/ijs.0.64323-0	2006	*

References

#7730

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18834

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73550

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297636.1 )

* These data were automatically processed and therefore are not curated

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Desulfovermiculus halophilus DSM 18834 DSM 18834

Desulfovermiculus halophilus DSM 18834 DSM 18834

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