Name: Desulfobulbus propionicus DSM 2032
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 4004

Type strain:

Species: Desulfobulbus propionicus

Culture col. no.: DSM 2032, ATCC 33891, Lindhorst (1pr3)

Strain history: <- F. Widdel, Universität Konstanz, Fakultät für Biologie, Konstanz, Germany; Lindhorst (1pr3) <- F. Widdel {1976}

NCBI tax ID(s): 577650 (strain), 894 (species)

SI-ID 40748

ATCC 33891, DSM 2032, NCIMB 12907, KCTC 2485, KCTC 4004, VKM B-1956

Special Collections

DSMZ

Other strains from Desulfobulbus propionicus

Section

Desulfobulbus propionicus DSM 2032 is an anaerobe, Gram-negative bacterium that was isolated from freshwater mud.

Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfobacterales*
	Family	*Desulfobulbaceae*
	Genus	*Desulfobulbus*
	Species	**Desulfobulbus propionicus**
	Full Scientific Name (LPSN)	Desulfobulbus propionicus Widdel 1981

Synonym

"Desulfobulbus propionicus"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.067

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #677]

Culture medium

DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194)

[Ref.: #677]

Culture medium growth

[Ref.: #677]

Culture medium link

Medium recipe at MediaDive

[Ref.: #677]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #677]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #677]

Oxygen tolerance

anaerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %96

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #677]	Sample type/isolated from	freshwater mud
[Ref.: #677]	Geographic location (country and/or sea, region)	Hannover, Lindhorst
[Ref.: #677]	Country	Germany
[Ref.: #677]	Country ISO 3 Code	DEU
[Ref.: #677]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Terrestrial	#Mud (Sludge)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY548789 (>99% sequence identity) for Desulfobulbus propionicus subclade from Microbeatlas

Aquatic Samples	1593
Soil Samples	235
Animal Samples	57
Plant Samples	102
Total Samples	1987

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #677]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #677]	Desulfobulbus propionicus 16S ribosomal RNA gene gene, partial sequence	AY548789	1533	GenBank ENA	577650 tax ID
[Ref.: #20218]	D.propionicus 16S ribosomal rRNA	M34410	1371	GenBank ENA	894 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfobulbus propionicus DSM 2032	GCA_000186885	complete	GenBank ENA	577650 tax ID	*
[Ref.: #66792]	Desulfobulbus propionicus DSM 2032	577650.3	complete	PATRIC	577650 tax ID	*
[Ref.: #66792]	Desulfobulbus propionicus 1pr3, DSM 2032	649633036	complete	JGI IMG/M	577650 tax ID	*

[Ref.: #677]

GC-content

59.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfobulbus propionicus DSM 2032 DSM 2032 NCBI: GCA_000186885.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	96	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfobulbus propionicus DSM 2032 DSM 2032 NCBI: GCA_000186885.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.067	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	85.772	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	84.49	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	85.577	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.04	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	72.048	no

Availability in culture collections External links

[Ref.: #677]

Culture collection no.

DSM 2032, ATCC 33891, Lindhorst (1pr3)

[Ref.: #73509]

SI-ID 40748

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfobulbus oligotrophicus sp. nov., a sulfate-reducing and propionate-oxidizing bacterium isolated from a municipal anaerobic sewage sludge digester.	El Houari A, Ranchou-Peyruse M, Ranchou-Peyruse A, Dakdaki A, Guignard M, Idouhammou L, Bennisse R, Bouterfass R, Guyoneaud R, Qatibi AI	Int J Syst Evol Microbiol	10.1099/ijsem.0.001615	2017	*
Metabolism	Identification and characterization of the first cholesterol-dependent cytolysins from Gram-negative bacteria.	Hotze EM, Le HM, Sieber JR, Bruxvoort C, McInerney MJ, Tweten RK	Infect Immun	10.1128/IAI.00927-12	2012	*

References

#677	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2032

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73509

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID40748.1 )

* These data were automatically processed and therefore are not curated

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Desulfobulbus propionicus DSM 2032 DSM 2032

Desulfobulbus propionicus DSM 2032 DSM 2032

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