Brachybacterium saurashtrense (DSM 23186, IMCC 252, JCM 19544)

Name: Brachybacterium saurashtrense (DSM 23186, IMCC 252, JCM 19544)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3917

Type strain

Strain Designation JG 06

Culture col. no. DSM 23186 IMCC 252 JCM 19544 JG 06

NCBI tax ID(s) 556288

Special Collections DSMZ JCM Literature strains

History <- B. Jha, Central Salt and Marine Chemicals Res. Inst., Bhavnagar, India; JG 06 <- I. Gontia DSM 23186 <-- B. Jha JG 06 <-- I. Gontia.

Links

Brachybacterium saurashtrense JG 06 is an aerobe, Gram-positive, coccus-shaped prokaryote that was isolated from roots of Salicornia brachiata from coastal marshy swamps.

Gram-positive coccus-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 393388

JCM 19544

@ref 20215

Last LPSN update 2026-02-09 11:18:36

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Dermabacteraceae

Genus Brachybacterium

Species Brachybacterium saurashtrense

Full scientific name Brachybacterium saurashtrense Gontia et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29868	positive	0.55 µm	0.55 µm	coccus-shaped
125439	positive				95.1
125438					91

Pigmentation

29868

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
29868	positive	growth	10-45
29868	positive	optimum	30	mesophilic
67770	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
29868	positive	optimum	8
29868	positive	growth	06-11	alkaliphile

Physiology and metabolism

Oxygen tolerance

29868

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29868	NaCl	positive	growth	<15 %
29868	NaCl	positive	optimum	8 %

Observation

67770

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29868	28757 ChEBI	fructose	+	carbon source
29868	28260 ChEBI	galactose	+	carbon source
29868	17234 ChEBI	glucose	+	carbon source
29868	17716 ChEBI	lactose	+	carbon source
29868	17306 ChEBI	maltose	+	carbon source
29868	37684 ChEBI	mannose	+	carbon source
29868	17632 ChEBI	nitrate	+	reduction
29868	17992 ChEBI	sucrose	+	carbon source
29868	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
29868	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
29868	35581 ChEBI	indole	+

Enzymes

@ref	Value	Activity	Ec
29868	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Coast
#Environmental	#Terrestrial	#Wetland (Swamp)
#Host	#Plants	#Aquatic plant
#Host Body-Site	#Plant	#Root (Rhizome)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
16741	roots of Salicornia brachiata from coastal marshy swamps	Salicornia brachiata	Bhavnagar district, Gujarat (21° 45' N 72° 14' E)	India	IND	Asia	21.75	72.2333 21.75/72.2333
67770	Roots of Salicornia brachiata from coastal marshy swamps	Salicornia brachiata	Bhavnagar District, Gujarat	India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU937750 (>99% sequence identity) for Brachybacterium from Microbeatlas

Aquatic Samples	152
Soil Samples	59
Animal Samples	812
Plant Samples	62
Total Samples	1085

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16741	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM335547v1 assembly for Brachybacterium saurashtrense DSM 23186	complete	GCA_003355475	556288.4	2848551377	556288	94.58
67770	ASM399429v1 assembly for Brachybacterium saurashtrense DSM 23186	scaffold	GCA_003994295	556288.5	2866391516	556288	67.6

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16741	Brachybacterium saurashtrense strain JG 06 16S ribosomal RNA gene, partial sequence	EU937750	1485		556288

GC content

@ref	GC-content (mol%)	Method
16741	73.0	high performance liquid chromatography (HPLC)
16741	52.6
29868	73

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Brachybacterium saurashtrense strain DSM 23186
PATRIC: 556288.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	82.60	no
125439	motility	BacteriaNetⓘ	no	63.10	no
125439	gram_stain	BacteriaNetⓘ	positive	95.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	85.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Brachybacterium saurashtrense DSM 23186
NCBI: GCA_003355475.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.19	yes
125438	anaerobic	anaerobicⓘ	no	95.90	yes
125438	aerobic	aerobicⓘ	yes	76.79	yes
125438	spore-forming	spore-formingⓘ	no	70.26	no
125438	thermophilic	thermophileⓘ	no	94.50	no
125438	flagellated	motile2+ⓘ	no	91.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Brachybacterium massiliense sp. nov., a new bacterium isolated from stool from a healthy Senegalese child.	Mekhalif F, Tidjani Alou M, Zgheib R, Lo CI, Fournier PE, Raoult D, Lagier JC	New Microbes New Infect	10.1016/j.nmni.2019.100588	2019
Phylogeny	Brachybacterium aquaticum sp. nov., a novel actinobacterium isolated from seawater.	Kaur G, Kumar N, Mual P, Kumar A, Kumar RM, Mayilraj S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001414	2016
Phylogeny	Brachybacterium saurashtrense sp. nov., a halotolerant root-associated bacterium with plant growth-promoting potential.	Gontia I, Kavita K, Schmid M, Hartmann A, Jha B	Int J Syst Evol Microbiol	10.1099/ijs.0.023176-0	2011

References

#16741	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23186
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26242	IJSEM 2799 2011 ( DOI 10.1099/ijs.0.023176-0 , PubMed 21216918 )
#29868	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26242
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Brachybacterium saurashtrense (DSM 23186, IMCC 252, JCM 19544)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003355475

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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