Name: Brachybacterium saurashtrense JG 06
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3917

Type strain:

Species: Brachybacterium saurashtrense

Strain Designation: JG 06

Culture col. no.: DSM 23186, IMCC 252, JCM 19544

Strain history: DSM 23186 <-- B. Jha JG 06 <-- I. Gontia.

NCBI tax ID(s): 556288 (species)

Special Collections

Section

Brachybacterium saurashtrense JG 06 is an aerobe, Gram-positive, coccus-shaped bacterium that was isolated from roots of Salicornia brachiata from coastal marshy swamps.

coccus-shaped
Gram-positive
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Dermabacteraceae*
	Genus	*Brachybacterium*
	Species	**Brachybacterium saurashtrense**
	Full Scientific Name (LPSN)	Brachybacterium saurashtrense Gontia et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #29868]	Gram stain	positive

[Ref.: #29868]	Cell length	0.55 µm

[Ref.: #29868]	Cell width	0.55 µm

[Ref.: #29868]	Cell shape	coccus-shaped

[Ref.: #29868]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91

[Ref.: #29868]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29868]	growth	10-45 °C
[Ref.: #29868]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #29868]			optimum	8
[Ref.: #29868]			growth	06-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29868]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29868]		NaCl		growth	<15	%
[Ref.: #29868]		NaCl		optimum	8	%

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29868]	fructose ChEBI	+	carbon source
[Ref.: #29868]	galactose ChEBI	+	carbon source
[Ref.: #29868]	glucose ChEBI	+	carbon source
[Ref.: #29868]	lactose ChEBI	+	carbon source
[Ref.: #29868]	maltose ChEBI	+	carbon source
[Ref.: #29868]	mannose ChEBI	+	carbon source
[Ref.: #29868]	nitrate ChEBI	+	reduction
[Ref.: #29868]	sucrose ChEBI	+	carbon source
[Ref.: #29868]	xylose ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #29868]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #29868]		indole ChEBI	+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29868]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16741]	Sample type/isolated from	roots of Salicornia brachiata from coastal marshy swamps
[Ref.: #16741]	Host species	Salicornia brachiata
[Ref.: #16741]	Geographic location (country and/or sea, region)	Bhavnagar district, Gujarat (21° 45' N 72° 14' E)
[Ref.: #16741]	Country	India
[Ref.: #16741]	Country ISO 3 Code	IND
[Ref.: #16741]	Continent	Asia
[Ref.: #16741]	Geographic location	21.7500°/72.2333°

[Ref.: #67770]	Sample type/isolated from	Roots of Salicornia brachiata from coastal marshy swamps
[Ref.: #67770]	Host species	Salicornia brachiata
[Ref.: #67770]	Geographic location (country and/or sea, region)	Bhavnagar District, Gujarat
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Coast
#Environmental	#Terrestrial	#Wetland (Swamp)
#Host	#Plants	#Aquatic plant
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU937750 (>99% sequence identity) for Brachybacterium from Microbeatlas

Aquatic Samples	152
Soil Samples	59
Animal Samples	812
Plant Samples	62
Total Samples	1085

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16741]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16741]	Brachybacterium saurashtrense strain JG 06 16S ribosomal RNA gene, partial sequence	EU937750	1485	GenBank ENA	556288 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Brachybacterium saurashtrense DSM 23186	GCA_003994295	scaffold	GenBank ENA	556288 tax ID
[Ref.: #66792]	Brachybacterium saurashtrense DSM 23186	GCA_003355475	complete	GenBank ENA	556288 tax ID	*
[Ref.: #66792]	Brachybacterium saurashtrense strain DSM 23186	556288.5	wgs	PATRIC	556288 tax ID	*
[Ref.: #66792]	Brachybacterium saurashtrense strain DSM 23186	556288.4	complete	PATRIC	556288 tax ID	*
[Ref.: #66792]	Brachybacterium saurashtrense DSM 23186	2866391516	draft	JGI IMG/M	556288 tax ID	*
[Ref.: #66792]	Brachybacterium saurashtrense DSM 23186	2848551377	complete	JGI IMG/M	556288 tax ID	*

[Ref.: #16741]	GC-content	73.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #16741]	GC-content	52.6 mol%
[Ref.: #29868]	GC-content	73 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Brachybacterium saurashtrense DSM 23186 NCBI: GCA_003355475.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Brachybacterium saurashtrense DSM 23186 NCBI: GCA_003355475.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.194	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.897	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	76.789	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	70.261	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91	yes

Availability in culture collections External links

[Ref.: #16741]

Culture collection no.

DSM 23186, IMCC 252, JCM 19544

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Brachybacterium massiliense sp. nov., a new bacterium isolated from stool from a healthy Senegalese child.	Mekhalif F, Tidjani Alou M, Zgheib R, Lo CI, Fournier PE, Raoult D, Lagier JC	New Microbes New Infect	10.1016/j.nmni.2019.100588	2019	*
Phylogeny	Brachybacterium aquaticum sp. nov., a novel actinobacterium isolated from seawater.	Kaur G, Kumar N, Mual P, Kumar A, Kumar RM, Mayilraj S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001414	2016	*
Phylogeny	Brachybacterium saurashtrense sp. nov., a halotolerant root-associated bacterium with plant growth-promoting potential.	Gontia I, Kavita K, Schmid M, Hartmann A, Jha B	Int J Syst Evol Microbiol	10.1099/ijs.0.023176-0	2011	*

References

#16741

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23186

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29868

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26242 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#26242

IJSEM 2799 2011 ( DOI 10.1099/ijs.0.023176-0 , PubMed 21216918 )

* These data were automatically processed and therefore are not curated

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Brachybacterium saurashtrense DSM 23186

Brachybacterium saurashtrense DSM 23186

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