Deinococcus maricopensis (DSM 21211, LMG 22137, NRRL B-23946)

Cell morphology

Multimedia

• @ref:	66793
  multimedia content:	EM_DSM_21211_1.jpg
  multimedia.multimedia content:	EM_DSM_21211_1.jpg
  caption:	electron microscopic image
  intellectual property rights:	© HZI/Manfred Rohde
  manual_annotation:	1

Culture medium

@ref	Name	Growth	Medium link	Composition
15524	RICH MEDIUM (DSMZ Medium 736)		Medium recipe at MediaDive	Name: RICH MEDIUM (DSMZ Medium 736) Composition: Agar 20.0 g/l Bacto peptone 10.0 g/l Yeast extract 5.0 g/l Malt extract 5.0 g/l Casamino acids 5.0 g/l Glycerol 2.0 g/l Meat extract 2.0 g/l MgSO4 x 7 H2O 1.0 g/l Tween 80 0.05 g/l Distilled water

Culture temp

Oxygen tolerance

Spore formation

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions	external links
66794	cellulose degradation	100	5 of 5
66794	enterobactin biosynthesis	100	3 of 3
66794	acetate fermentation	100	4 of 4
66794	ppGpp biosynthesis	100	4 of 4
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	methylglyoxal degradation	100	5 of 5
66794	valine metabolism	100	9 of 9
66794	starch degradation	100	10 of 10
66794	adipate degradation	100	2 of 2
66794	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	tetrahydrofolate metabolism	100	14 of 14
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	denitrification	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	glycogen metabolism	100	5 of 5
66794	palmitate biosynthesis	95.45	21 of 22
66794	threonine metabolism	90	9 of 10
66794	4-hydroxyphenylacetate degradation	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	gluconeogenesis	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	citric acid cycle	85.71	12 of 14
66794	photosynthesis	85.71	12 of 14
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	glutathione metabolism	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	leucine metabolism	84.62	11 of 13
66794	vitamin B1 metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	purine metabolism	82.98	78 of 94
66794	vitamin B12 metabolism	82.35	28 of 34
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	pentose phosphate pathway	81.82	9 of 11
66794	propionate fermentation	80	8 of 10
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	Entner Doudoroff pathway	80	8 of 10
66794	gallate degradation	80	4 of 5
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	isoprenoid biosynthesis	76.92	20 of 26
66794	glycolysis	76.47	13 of 17
66794	pyrimidine metabolism	75.56	34 of 45
66794	butanoate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	tryptophan metabolism	73.68	28 of 38
66794	flavin biosynthesis	73.33	11 of 15
66794	metabolism of disaccharids	72.73	8 of 11
66794	histidine metabolism	72.41	21 of 29
66794	cysteine metabolism	72.22	13 of 18
66794	propanol degradation	71.43	5 of 7
66794	phenylalanine metabolism	69.23	9 of 13
66794	carotenoid biosynthesis	68.18	15 of 22
66794	oxidative phosphorylation	68.13	62 of 91
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	d-mannose degradation	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	alanine metabolism	65.52	19 of 29
66794	phenol degradation	65	13 of 20
66794	heme metabolism	64.29	9 of 14
66794	proline metabolism	63.64	7 of 11
66794	d-xylose degradation	63.64	7 of 11
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	arginine metabolism	62.5	15 of 24
66794	methionine metabolism	61.54	16 of 26
66794	urea cycle	61.54	8 of 13
66794	non-pathway related	60.53	23 of 38
66794	3-phenylpropionate degradation	60	9 of 15
66794	myo-inositol biosynthesis	60	6 of 10
66794	lipoate biosynthesis	60	3 of 5
66794	3-chlorocatechol degradation	60	3 of 5
66794	lipid metabolism	58.06	18 of 31
66794	degradation of pentoses	57.14	16 of 28
66794	cardiolipin biosynthesis	57.14	4 of 7
66794	nitrate assimilation	55.56	5 of 9
66794	sulfate reduction	53.85	7 of 13
66794	polyamine pathway	52.17	12 of 23
66794	phenylmercury acetate degradation	50	1 of 2
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	lysine metabolism	50	21 of 42
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	pantothenate biosynthesis	50	3 of 6
66794	ethanol fermentation	50	1 of 2
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	biotin biosynthesis	50	2 of 4
66794	kanosamine biosynthesis II	50	1 of 2
66794	lipid A biosynthesis	44.44	4 of 9
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	tyrosine metabolism	42.86	6 of 14
66794	vitamin K metabolism	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	chlorophyll metabolism	38.89	7 of 18
66794	cholesterol biosynthesis	36.36	4 of 11
66794	vitamin B6 metabolism	36.36	4 of 11
66794	cyanate degradation	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	octane oxidation	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	degradation of sugar acids	32	8 of 25
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	bile acid biosynthesis, neutral pathway	29.41	5 of 17
66794	ascorbate metabolism	27.27	6 of 22
66794	toluene degradation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13

Isolation source categories

Isolation

Taxonmaps

69479

Global distribution of 16S sequence AY743274 (>99% sequence identity) for Deinococcus maricopensis subclade from Microbeatlas

Aquatic Samples	156
Soil Samples	189
Animal Samples	208
Plant Samples	34
Total Samples	587

Risk assessment

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM18638v1 assembly for Deinococcus maricopensis DSM 21211	complete	GCA_000186385	709986.3	649633034	709986	97.73

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15524	Deinococcus maricopensis strain LB-34 16S ribosomal RNA gene, partial sequence	AY743274	1453		709986

GC content

Predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Lack of the Bacterial Phytochrome Protein Decreases Deinococcus radiodurans Resistance to Mitomycin C.	Jung JH, Jeong S, Im S, Kim MK, Seo HS, Lim S.	Front Microbiol	10.3389/fmicb.2021.659233	2021
Metabolism	New Insights into the Function and Global Distribution of Polyethylene Terephthalate (PET)-Degrading Bacteria and Enzymes in Marine and Terrestrial Metagenomes.	Danso D, Schmeisser C, Chow J, Zimmermann W, Wei R, Leggewie C, Li X, Hazen T, Streit WR.	Appl Environ Microbiol	10.1128/aem.02773-17	2018
Genetics	The unusual substrate specificity of a virulence associated serine hydrolase from the highly toxic bacterium, Francisella tularensis.	Farberg AM, Hart WK, Johnson RJ.	Biochem Biophys Rep	10.1016/j.bbrep.2016.07.006	2016
	Shining a light on dark sequencing: characterising errors in Ion Torrent PGM data.	Bragg LM, Stone G, Butler MK, Hugenholtz P, Tyson GW.	PLoS Comput Biol	10.1371/journal.pcbi.1003031	2013
Metabolism	Phenylacetyl coenzyme A is an effector molecule of the TetR family transcriptional repressor PaaR from Thermus thermophilus HB8.	Sakamoto K, Agari Y, Kuramitsu S, Shinkai A.	J Bacteriol	10.1128/jb.05203-11	2011
Enzymology	Evolutionary diversification and characterization of the eubacterial gene family encoding DXR type II, an alternative isoprenoid biosynthetic enzyme.	Carretero-Paulet L, Lipska A, Perez-Gil J, Sangari FJ, Albert VA, Rodriguez-Concepcion M.	BMC Evol Biol	10.1186/1471-2148-13-180	2013
Phylogeny	Extensive diversity of ionizing-radiation-resistant bacteria recovered from Sonoran Desert soil and description of nine new species of the genus Deinococcus obtained from a single soil sample.	Rainey FA, Ray K, Ferreira M, Gatz BZ, Nobre MF, Bagaley D, Rash BA, Park MJ, Earl AM, Shank NC, Small AM, Henk MC, Battista JR, Kampfer P, da Costa MS.	Appl Environ Microbiol	10.1128/aem.71.9.5225-5235.2005	2005
	Predicted Cold Shock Proteins from the Extremophilic Bacterium Deinococcus maricopensis and Related Deinococcus Species.	LaGier MJ	Int J Microbiol	10.1155/2017/5231424	2017
Genetics	Complete genome sequence of Deinococcus maricopensis type strain (LB-34).	Pukall R, Zeytun A, Lucas S, Lapidus A, Hammon N, Deshpande S, Nolan M, Cheng JF, Pitluck S, Liolios K, Pagani I, Mikhailova N, Ivanova N, Mavromatis K, Pati A, Tapia R, Han C, Goodwin L, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Brambilla EM, Rohde M, Goker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP	Stand Genomic Sci	10.4056/sigs.1633949	2011
Phylogeny	Deinococcus misasensis and Deinococcus roseus, novel members of the genus Deinococcus, isolated from a radioactive site in Japan.	Asker D, Awad TS, Beppu T, Ueda K	Syst Appl Microbiol	10.1016/j.syapm.2007.10.002	2007