Name: Runella slithyformis DSM 19594
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3815

Type strain:

Species: Runella slithyformis

Culture col. no.: DSM 19594, ATCC 29530, LMG 11500, NCIMB 11436, LSU 4

Strain history: <- NCIMB <- J. M. Larkin, Louisiana State Univ.; LSU4

NCBI tax ID(s): 761193 (strain), 106 (species)

SI-ID 4937

LMG 11500, ATCC 29530, NCIMB 11436, KCTC 12163, DSM 19594

Special Collections

DSMZ

Section

Runella slithyformis DSM 19594 is a Gram-negative bacterium that was isolated from Fresh water lake.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Spirosomataceae*
	Genus	*Runella*
	Species	**Runella slithyformis**
	Full Scientific Name (LPSN)	Runella slithyformis Larkin and Williams 1978 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97.292

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8198]

Culture medium

ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7)

[Ref.: #8198]

Culture medium growth

[Ref.: #8198]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8198]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8198]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8198]	Sample type/isolated from	Fresh water lake
[Ref.: #8198]	Geographic location (country and/or sea, region)	Louisiana, Baton Rouge
[Ref.: #8198]	Country	USA
[Ref.: #8198]	Country ISO 3 Code	USA
[Ref.: #8198]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence NR_074339 (>99% sequence identity) for Runella slithyformis subclade from Microbeatlas

Aquatic Samples	619
Soil Samples	40
Animal Samples	124
Plant Samples	21
Total Samples	804

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8198]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8198]	Runella slithyformis DSM 19594 16S ribosomal RNA, partial sequence	NR_074339	1493	GenBank ENA	761193 tax ID
[Ref.: #124043]	Runella slithyformis strain ATCC 29530 16S ribosomal RNA gene, partial sequence.	M62786	1456	GenBank ENA	106 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Runella slithyformis LSU4, DSM 19594	2505679030	complete	JGI IMG/M	761193 tax ID	*
[Ref.: #66792]	Runella slithyformis DSM 19594	761193.13	plasmid	PATRIC	761193 tax ID	*
[Ref.: #66792]	Runella slithyformis DSM 19594	761193.10	plasmid	PATRIC	761193 tax ID	*
[Ref.: #66792]	Runella slithyformis DSM 19594	761193.12	plasmid	PATRIC	761193 tax ID	*
[Ref.: #66792]	Runella slithyformis DSM 19594	761193.11	plasmid	PATRIC	761193 tax ID	*
[Ref.: #66792]	Runella slithyformis DSM 19594	761193.14	plasmid	PATRIC	761193 tax ID	*

[Ref.: #8198]

GC-content

46.6 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Runella slithyformis DSM 19594 DSM 19594 NCBI: GCA_000218895.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Runella slithyformis DSM 19594 DSM 19594 NCBI: GCA_000218895.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.292	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.912	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.195	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.52	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.566	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	86.5	no

Availability in culture collections External links

[Ref.: #8198]

Culture collection no.

DSM 19594, ATCC 29530, LMG 11500, NCIMB 11436, LSU 4

[Ref.: #73326]

SI-ID 4937

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Runella aurantiaca sp. nov., isolated from sludge of a manganese mine.	Yang X, Zhou Z, Liao S, Wang G	Int J Syst Evol Microbiol	10.1099/ijsem.0.003435	2019	*
Phylogeny	Runella soli sp. nov., isolated from garden soil.	Chhetri G, Kim J, Kim I, Kim MK, Seo T	Antonie Van Leeuwenhoek	10.1007/s10482-019-01257-9	2019	*
Phylogeny	Runella palustris sp. nov., isolated from wetland freshwater.	Kim H, Kang H, Joung Y, Joh K	Int J Syst Evol Microbiol	10.1099/ijsem.0.001692	2017	*
Genetics	Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4(T)).	Copeland A, Zhang X, Misra M, Lapidus A, Nolan M, Lucas S, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Pan C, Jeffries CD, Detter JC, Brambilla EM, Rohde M, Djao OD, Goker M, Sikorski J, Tindall BJ, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Mavromatis K	Stand Genomic Sci	10.4056/sigs.2475579	2012	*
Phylogeny	Runella limosa sp. nov., isolated from activated sludge.	Ryu SH, Nguyen TTH, Park W, Kim CJ, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.64460-0	2006	*

References

#8198

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19594

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73326

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID4937.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Runella slithyformis DSM 19594 DSM 19594

Runella slithyformis DSM 19594 DSM 19594

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