Name: Flexibacter sp. DSM 3589
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3786

Type strain:

Species: Flexibacter sp.

Culture col. no.: DSM 3589, ATCC 35208, SC 12,681

Strain history: <- ATCC <- E.R. Squibb Inst. Med. Res., SC 12,681

NCBI tax ID(s): 1005 (species)

SI-ID 45978

ATCC 35208, DSM 3589, KCTC 2670

Other strains from Flexibacter sp.

F. sp. DSM 3098, ATCC 35103, SC 11479
F. sp. DSM 4510, BKM B-1001, VKM B-1001
F. sp. CCUG 28579
F. sp. CCUG 28581

Section

Flexibacter sp. DSM 3589 is a mesophilic, Gram-negative bacterium that was isolated from decaying freshwater grass.

Gram-negative
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Flexibacteraceae*
	Genus	*Flexibacter*
	Full Scientific Name (LPSN)	Flexibacter Soriano 1945 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.806

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1414]

Culture medium

GFY MEDIUM (DSMZ Medium 359)

[Ref.: #1414]

Culture medium growth

[Ref.: #1414]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1414]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1414]			growth	25 °C

[Ref.: #1414]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.421

[Ref.: #1414]

Name of produced compound

monobactam SQ 28,332

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1414]	Sample type/isolated from	decaying freshwater grass
[Ref.: #1414]	Geographic location (country and/or sea, region)	New Jersey, Great Swamp
[Ref.: #1414]	Country	USA
[Ref.: #1414]	Country ISO 3 Code	USA
[Ref.: #1414]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Host	#Plants	#Decomposing plant
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	[Flexibacter] sp. ATCC 35208 strain ATCC 35208	1936242.3	wgs	PATRIC	1936242 tax ID	*
[Ref.: #66792]	Chitinophaga sp. ATCC 35208	2884774554	draft	JGI IMG/M	1936242 tax ID	*
[Ref.: #66792]	[Flexibacter] sp. ATCC 35208	GCA_001975825	scaffold	GenBank	1936242 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: [Flexibacter] sp. ATCC 35208 ATCC 35208 NCBI: GCA_001975825.1
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: [Flexibacter] sp. ATCC 35208 ATCC 35208 NCBI: GCA_001975825.1
[Ref.: #69480]	flagellated	no	97.276	no
[Ref.: #69480]	gram-positive	no	97.535	no
[Ref.: #69480]	anaerobic	no	98.403	no
[Ref.: #69480]	aerobic	yes	77.405	no
[Ref.: #69480]	halophile	no	95.028	no
[Ref.: #69480]	spore-forming	no	87.996	no
[Ref.: #69480]	glucose-util	yes	91.914	no
[Ref.: #69480]	thermophile	no	99.625	yes
[Ref.: #69480]	motile	no	90.596	no
[Ref.: #69480]	glucose-ferment	no	79.998	no

Availability in culture collections External links

[Ref.: #1414]

Culture collection no.

DSM 3589, ATCC 35208, SC 12,681

[Ref.: #73298]

SI-ID 45978

References

#1414

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3589

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73298

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45978.1 )

* These data were automatically processed and therefore are not curated

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[Flexibacter] sp. ATCC 35208 ATCC 35208

[Flexibacter] sp. ATCC 35208 ATCC 35208

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