Dyadobacter fermentans (DSM 18053, ATCC 700827, CIP 107007)

Name: Dyadobacter fermentans (DSM 18053, ATCC 700827, CIP 107007)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3776

Type strain

Strain Designation NS 114, NS114

Culture col. no. DSM 18053 ATCC 700827 CIP 107007 KCTC 52180 NS 114 1 more

NCBI tax ID(s) 471854 94254

Special Collections DSMZ KCTC CIP Literature strains

Links

Dyadobacter fermentans NS 114 is an aerobe, chemoorganotroph, mesophilic prokaryote that was isolated from surface sterilized stems of Zea mays.

Gram-negative coccus-shaped aerobe chemoorganotroph mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 44159

KCTC 52180,ATCC 700827,NCIMB 13785,CIP 107007,DSM 18053

@ref 20215

Last LPSN update 2025-12-16 09:47:39

Domain Pseudomonadati

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Spirosomataceae

Genus Dyadobacter

Species Dyadobacter fermentans

Full scientific name Dyadobacter fermentans Chelius and Triplett 2000

BacDive ID	Other strains from **Dyadobacter fermentans** (1)	Type strain
3775	D. fermentans R1L3, DSM 16545

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell shape
43374	negative	0.75-2 µm	coccus-shaped
119308	negative		rod-shaped
125439	negative
125438	negative

Colony morphology

43374

Colony coloryellow

Pigmentation

@ref	Production	Name
119308		Flexirubin

Multimedia

@ref:	66793
multimedia content:	EM_DSM_18053_1.jpg
multimedia.multimedia content:	EM_DSM_18053_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7272	REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)	Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
39632	MEDIUM 29- Brain heart agar		Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
43374	Reasoner's 2A agar (R2A)
43374	YM broth
43374	AcD (nitrogen-limited agar)		containing 10 p.p.m nitrogen and Litmus milk
43374	Ayers medium
119308	CIP Medium 29	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7272	positive	growth	28	mesophilic
39632	positive	growth	30	mesophilic
43374	negative	growth	4
43374	positive	growth	15-37
43374	positive	maximum	37	mesophilic
119308	positive	growth	30	mesophilic
119308	negative	growth	5
119308	negative	growth	15
119308	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
43374	aerobe
119308	obligate aerobe
125439	obligate aerobe

Nutrition type

43374

Typechemoorganotroph

Spore formation

@ref	Spore formation	Confidence
125439		98.7

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43374	NaCl	positive	growth	1.5 %
119308	NaCl	positive	growth	0-6 %
119308	NaCl		growth	8 %
119308	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43374	16808 ChEBI	2-dehydro-D-gluconate	-	carbon source
43374	58143 ChEBI	5-dehydro-D-gluconate	+	growth
43374	58143 ChEBI	5-dehydro-D-gluconate	+	carbon source
43374	30089 ChEBI	acetate	+	growth
43374	30089 ChEBI	acetate	+	carbon source
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
43374	2509 ChEBI	agar	-	degradation
43374	27613 ChEBI	amygdalin	+	carbon source
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
43374	18305 ChEBI	arbutin	+	carbon source
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
43374	17057 ChEBI	cellobiose	+	carbon source
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
43374	62968 ChEBI	cellulose	-	degradation
119308	16947 ChEBI	citrate	-	carbon source
43374	17108 ChEBI	D-arabinose	+	carbon source
68371	17108 ChEBI	D-arabinose	+	builds acid from	from API 50CH acid
43374	18333 ChEBI	D-arabitol	+	growth
43374	18333 ChEBI	D-arabitol	+	carbon source
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
43374	15824 ChEBI	D-fructose	+	carbon source
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
43374	28847 ChEBI	D-fucose	+	carbon source
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
43374	17634 ChEBI	D-glucose	+	carbon source
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
43374	62318 ChEBI	D-lyxose	+	growth
43374	62318 ChEBI	D-lyxose	+	carbon source
68371	62318 ChEBI	D-lyxose	+	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
43374	16443 ChEBI	D-tagatose	+	carbon source
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
43374	65327 ChEBI	D-xylose	+	carbon source
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
43374	17113 ChEBI	erythritol	+	carbon source
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
43374	4853 ChEBI	esculin	+	carbon source
119308	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
43374	29806 ChEBI	fumarate	+	growth
43374	29806 ChEBI	fumarate	+	carbon source
43374	16813 ChEBI	galactitol	+/-	growth
43374	16813 ChEBI	galactitol	+/-	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
43374	28260 ChEBI	galactose	+	carbon source
43374	5291 ChEBI	gelatin	-	degradation
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
43374	28066 ChEBI	gentiobiose	+	carbon source
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
43374	24265 ChEBI	gluconate	-	carbon source
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
43374	17234 ChEBI	glucose	+	builds acid from
43374	17234 ChEBI	glucose	+	fermentation
119308	17234 ChEBI	glucose	-	fermentation
119308	17234 ChEBI	glucose	+/-	degradation
43374	17754 ChEBI	glycerol	+/-	growth
43374	17754 ChEBI	glycerol	+/-	carbon source
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
43374	28087 ChEBI	glycogen	-	growth
43374	28087 ChEBI	glycogen	-	carbon source
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
43374	15443 ChEBI	inulin	+	carbon source
68371	15443 ChEBI	inulin	+	builds acid from	from API 50CH acid
43374	30849 ChEBI	L-arabinose	+	carbon source
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
43374	18403 ChEBI	L-arabitol	+/-	growth
43374	18403 ChEBI	L-arabitol	+/-	carbon source
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
43374	18287 ChEBI	L-fucose	+	carbon source
68371	18287 ChEBI	L-fucose	+	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	+	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
43374	65328 ChEBI	L-xylose	+	carbon source
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
43374	17716 ChEBI	lactose	+	carbon source
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
43374	25115 ChEBI	malate	+	growth
43374	25115 ChEBI	malate	+	carbon source
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
43374	15792 ChEBI	malonate	+	growth
43374	15792 ChEBI	malonate	+	carbon source
43374	17306 ChEBI	maltose	+	carbon source
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
43374	29864 ChEBI	mannitol	+	growth
43374	29864 ChEBI	mannitol	+	carbon source
43374	37684 ChEBI	mannose	+	carbon source
43374	6731 ChEBI	melezitose	+	carbon source
68371	6731 ChEBI	melezitose	+	builds acid from	from API 50CH acid
43374	28053 ChEBI	melibiose	+	carbon source
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
43374	17790 ChEBI	methanol	-	growth
43374	17790 ChEBI	methanol	-	carbon source
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from	from API 50CH acid
43374	43943 ChEBI	methyl alpha-D-mannoside	+	carbon source
68371	43943 ChEBI	methyl alpha-D-mannoside	+	builds acid from	from API 50CH acid
43374	74863 ChEBI	methyl beta-D-xylopyranoside	+	carbon source
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
43374	37657 ChEBI	methyl D-glucoside	+	carbon source
43374	17268 ChEBI	myo-inositol	+	growth
43374	17268 ChEBI	myo-inositol	+	carbon source
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
43374	506227 ChEBI	N-acetylglucosamine	+	carbon source
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
43374	17632 ChEBI	nitrate	-	electron acceptor
119308	17632 ChEBI	nitrate	-	reduction
119308	17632 ChEBI	nitrate	-	respiration
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
119308	16301 ChEBI	nitrite	-	reduction
43374		peptone	+	growth
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
43374	16634 ChEBI	raffinose	+	carbon source
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
43374	26546 ChEBI	rhamnose	+	carbon source
43374	15963 ChEBI	ribitol	-	carbon source
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
43374	33942 ChEBI	ribose	+	builds acid from
43374	17814 ChEBI	salicin	+	carbon source
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
119308	132112 ChEBI	sodium thiosulfate	-	builds gas from
43374	30911 ChEBI	sorbitol	+/-	growth
43374	30911 ChEBI	sorbitol	+/-	carbon source
43374	27922 ChEBI	sorbose	+	growth
43374	27922 ChEBI	sorbose	+	carbon source
43374	28017 ChEBI	starch	-	degradation
43374	28017 ChEBI	starch	+	growth
43374	28017 ChEBI	starch	+	carbon source
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
43374	17992 ChEBI	sucrose	+	carbon source
43374	17992 ChEBI	sucrose	+	builds acid from
43374	17992 ChEBI	sucrose	+	fermentation
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
43374	30929 ChEBI	tartrate	+	growth
43374	30929 ChEBI	tartrate	+	carbon source
43374	27082 ChEBI	trehalose	+	carbon source
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
43374	32528 ChEBI	turanose	+	carbon source
68371	32528 ChEBI	turanose	+	builds acid from	from API 50CH acid
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
43374	17151 ChEBI	xylitol	+	carbon source
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.
43374	28971	ampicillin	25 µg/mL
43374	17698	chloramphenicol	25 µg/mL
43374	6104	kanamycin	50 µg/mL
43374	28077	rifampicin	25 µg/mL
43374	9215	spectinomycin	10 µg/mL
43374	17076	streptomycin	10 µg/mL
43374	27902	tetracycline	10 µg/mL
43374	45924	trimethoprim	25 µg/mL

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
119308	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
119308	15688 ChEBI	acetoin	-
119308	17234 ChEBI	glucose
68369	35581 ChEBI	indole		from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
119308	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
119308	amylase	-
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	+	3.2.1.23	from API zym
119308	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119308	caseinase	-	3.4.21.50
43374	catalase	+	1.11.1.6
119308	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
43374	cytochrome oxidase	+	1.9.3.1
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
119308	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119308	gamma-glutamyltransferase	+	2.3.2.2
119308	gelatinase	-
68369	gelatinase	-		from API 20NE
119308	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
119308	lipase	-
68382	lipase (C 14)	-		from API zym
119308	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119308	ornithine decarboxylase	-	4.1.1.17
119308	oxidase	+
119308	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	+	3.4.21.4	from API zym
119308	tryptophan deaminase	-
119308	tween esterase	-
119308	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	+		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	quinate degradation	100	2 of 2
66794	kanosamine biosynthesis II	100	2 of 2
66794	glycogen metabolism	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	adipate degradation	100	2 of 2
66794	CMP-KDO biosynthesis	100	4 of 4
66794	vitamin B1 metabolism	100	13 of 13
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	biotin biosynthesis	100	4 of 4
66794	starch degradation	100	10 of 10
66794	valine metabolism	100	9 of 9
66794	methylglyoxal degradation	100	5 of 5
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	acetoin degradation	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	denitrification	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	sulfopterin metabolism	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	cellulose degradation	100	5 of 5
66794	suberin monomers biosynthesis	100	2 of 2
66794	ceramide biosynthesis	100	1 of 1
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	photosynthesis	92.86	13 of 14
66794	Entner Doudoroff pathway	90	9 of 10
66794	myo-inositol biosynthesis	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	serine metabolism	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	d-mannose degradation	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	glutathione metabolism	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	propanol degradation	85.71	6 of 7
66794	phenylalanine metabolism	84.62	11 of 13
66794	degradation of sugar acids	84	21 of 25
66794	alanine metabolism	82.76	24 of 29
66794	purine metabolism	81.91	77 of 94
66794	pentose phosphate pathway	81.82	9 of 11
66794	metabolism of disaccharids	81.82	9 of 11
66794	proline metabolism	81.82	9 of 11
66794	lipid metabolism	80.65	25 of 31
66794	peptidoglycan biosynthesis	80	12 of 15
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	3-chlorocatechol degradation	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	heme metabolism	78.57	11 of 14
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	glycolysis	76.47	13 of 17
66794	pyrimidine metabolism	75.56	34 of 45
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	degradation of sugar alcohols	75	12 of 16
66794	glutamate and glutamine metabolism	75	21 of 28
66794	ketogluconate metabolism	75	6 of 8
66794	gluconeogenesis	75	6 of 8
66794	degradation of pentoses	75	21 of 28
66794	lysine metabolism	73.81	31 of 42
66794	flavin biosynthesis	73.33	11 of 15
66794	d-xylose degradation	72.73	8 of 11
66794	cysteine metabolism	72.22	13 of 18
66794	degradation of hexoses	72.22	13 of 18
66794	citric acid cycle	71.43	10 of 14
66794	tyrosine metabolism	71.43	10 of 14
66794	leucine metabolism	69.23	9 of 13
66794	isoprenoid biosynthesis	69.23	18 of 26
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	nitrate assimilation	66.67	6 of 9
66794	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
66794	vitamin B6 metabolism	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	histidine metabolism	62.07	18 of 29
66794	sulfate reduction	61.54	8 of 13
66794	methionine metabolism	61.54	16 of 26
66794	coenzyme M biosynthesis	60	6 of 10
66794	arachidonate biosynthesis	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	arginine metabolism	58.33	14 of 24
66794	tryptophan metabolism	57.89	22 of 38
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	carotenoid biosynthesis	54.55	12 of 22
66794	phosphatidylethanolamine bioynthesis	53.85	7 of 13
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	polyamine pathway	52.17	12 of 23
66794	ascorbate metabolism	50	11 of 22
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	phenylmercury acetate degradation	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	androgen and estrogen metabolism	50	8 of 16
66794	cyclohexanol degradation	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	selenocysteine biosynthesis	50	3 of 6
66794	4-hydroxyphenylacetate degradation	50	5 of 10
66794	oxidative phosphorylation	49.45	45 of 91
66794	vitamin B12 metabolism	47.06	16 of 34
66794	phenol degradation	45	9 of 20
66794	glycine betaine biosynthesis	40	2 of 5
66794	3-phenylpropionate degradation	40	6 of 15
66794	lipoate biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	factor 420 biosynthesis	40	2 of 5
66794	phenylacetate degradation (aerobic)	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	urea cycle	38.46	5 of 13
66794	carnitine metabolism	37.5	3 of 8
66794	sulfoquinovose degradation	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	catecholamine biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	butanoate fermentation	25	1 of 4
66794	vitamin E metabolism	25	1 of 4
66794	4-hydroxymandelate degradation	22.22	2 of 9
66794	allantoin degradation	22.22	2 of 9

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119308	-	+	+	+	-	+	+	+	+	-	+	+	-	+	-	+	+	+	+	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
7272	-	-	-	-	-	+	-	+	+	+	+	-	+	+	-	-	-	-	-	-	+

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
119308	not determinedn.d.	-	-	+	+	-	-	-	-	-	+	+	+	+	-	+	-	-	-	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	-	-	+	+	+	-	-	+	-	-	-	-	+/-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119308	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Stem (Branch)
#Host Body-Site	#Plant	#Sterilized plant part

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
7272	surface sterilized stems of Zea mays	Zea mays	USA	USA	North America
43374	surface-sterilized Zea mays stems
119308	Surface sterilized Zea mays stems		United States of America	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence AF137029 (>99% sequence identity) for Dyadobacter from Microbeatlas

Aquatic Samples	233
Soil Samples	517
Animal Samples	2781
Plant Samples	312
Total Samples	3843

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7272	1	Risk group (German classification) According to TRBA 466
119308	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2312v1 assembly for Dyadobacter fermentans DSM 18053	complete	GCA_000023125	471854.5	644736356	471854	99.35

Genome browser: GCA_000023125

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7272	Dyadobacter fermentans 16S ribosomal RNA gene, partial sequence	AF137029	1393		471854

GC content

@ref	GC-content (mol%)
7272	48
7272	51.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Dyadobacter fermentans DSM 18053
PATRIC: 471854.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.70	no
125439	motility	BacteriaNetⓘ	no	71.30	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Dyadobacter fermentans DSM 18053 DSM 18053
NCBI: GCA_000023125.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.37	yes
125438	anaerobic	anaerobicⓘ	no	98.68	yes
125438	aerobic	aerobicⓘ	yes	89.25	no
125438	spore-forming	spore-formingⓘ	no	84.41	no
125438	thermophilic	thermophileⓘ	no	97.49	yes
125438	flagellated	motile2+ⓘ	no	87.00	yes

Literature

Title	Authors	Journal	DOI	Year
Isolation of sulfonosphingolipids from the rosette-inducing bacterium Zobellia uliginosa and evaluation of their rosette-inducing activity.	Peng CC, Dormanns N, Regestein L, Beemelmanns C.	RSC Adv	10.1039/d3ra04314b	2023
Total Synthesis and Functional Evaluation of IORs, Sulfonolipid-based Inhibitors of Cell Differentiation in Salpingoeca rosetta.	Raguz L, Peng CC, Rutaganira FUN, Kruger T, Stanisic A, Jautzus T, Kries H, Kniemeyer O, Brakhage AA, King N, Beemelmanns C.	Angew Chem Int Ed Engl	10.1002/anie.202209105	2022
Efficacy and Safety of Postbiotic Contained Inactivated Lactobacillus reuteri ( Limosilactobacillus reuteri ) DSM 17648 as Adjuvant Therapy in the Eradication of Helicobacter pylori in Adults With Functional Dyspepsia: A Randomized Double-Blind Placebo-Controlled Trial.	Ivashkin V, Maev I, Poluektova E, Sinitsa A, Avalueva E, Mnatsakanyan M, Simanenkov V, Karpeeva J, Kopylova D, Kuprina I, Kucheryavyy Y, Lapina T, Solovyeva O, Soom M, Cheremushkina N, Maevskaya E, Maslennikov R.	Clin Transl Gastroenterol	10.14309/ctg.0000000000000750	2024
Limosilactobacillus reuteri DSM 17938 relieves inflammation, endoplasmic reticulum stress, and autophagy in hippocampus of western diet-fed rats by modulation of systemic inflammation.	Mazzoli A, Spagnuolo MS, De Palma F, Petecca N, Di Porzio A, Barrella V, Troise AD, Culurciello R, De Pascale S, Scaloni A, Mauriello G, Iossa S, Cigliano L.	Biofactors	10.1002/biof.2082	2024
Molecular study on recombinant cold-adapted, detergent- and alkali stable esterase (EstRag) from Lysinibacillus sp.: a member of family VI.	Matrawy AA, Khalil AI, Embaby AM.	World J Microbiol Biotechnol	10.1007/s11274-022-03402-5	2022
Highly accurate and sensitive absolute quantification of bacterial strains in human fecal samples.	Li F, Liu J, Maldonado-Gomez MX, Frese SA, Ganzle MG, Walter J.	Microbiome	10.1186/s40168-024-01881-2	2024
Limosilactobacillus fermentum ING8, a Potential Multifunctional Non-Starter Strain with Relevant Technological Properties and Antimicrobial Activity.	Pakroo S, Tarrah A, Takur R, Wu M, Corich V, Giacomini A.	Foods	10.3390/foods11050703	2022
Efficacy of probiotics for managing infantile colic due to their anti-inflammatory properties: a meta-analysis and systematic review.	Shirazinia R, Golabchifar AA, Fazeli MR.	Clin Exp Pediatr	10.3345/cep.2020.01676	2021
The Histidine Biosynthetic Genes in the Superphylum Bacteroidota-Rhodothermota-Balneolota-Chlorobiota: Insights into the Evolution of Gene Structure and Organization.	Del Duca S, Riccardi C, Vassallo A, Fontana G, Castronovo LM, Chioccioli S, Fani R.	Microorganisms	10.3390/microorganisms9071439	2021
Complete genome sequence of Dyadobacter fermentans type strain (NS114).	Lang E, Lapidus A, Chertkov O, Brettin T, Detter JC, Han C, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Land M, Hauser L, Chang YJ, Jeffries CD, Kopitz M, Bruce D, Goodwin L, Pitluck S, Ovchinnikova G, Pati A, Ivanova N, Mavrommatis K, Chen A, Palaniappan K, Chain P, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Goker M, Rohde M, Kyrpides NC, Klenk HP.	Stand Genomic Sci	10.4056/sigs.19262	2009
The polyextremophile Natranaerobius thermophilus adopts a dual adaptive strategy to long-term salinity stress, simultaneously accumulating compatible solutes and K.	Xing Q, Zhang S, Tao X, Mesbah NM, Mao X, Wang H, Wiegel J, Zhao B.	Appl Environ Microbiol	10.1128/aem.00145-24	2024
Probiotic Limosilactobacillus Reuteri (Lactobacillus Reuteri) Extends the Lifespan of Drosophila Melanogaster through Insulin/IGF-1 Signaling.	Lee HY, Lee JH, Kim SH, Jo SY, Min KJ.	Aging Dis	10.14336/ad.2023.0122	2023
Metagenomic analysis of soybean endosphere microbiome to reveal signatures of microbes for health and disease.	Chouhan U, Gamad U, Choudhari JK.	J Genet Eng Biotechnol	10.1186/s43141-023-00535-4	2023
Bacterial endosymbiont Cardinium cSfur genome sequence provides insights for understanding the symbiotic relationship in Sogatella furcifera host.	Zeng Z, Fu Y, Guo D, Wu Y, Ajayi OE, Wu Q.	BMC Genomics	10.1186/s12864-018-5078-y	2018
Lack of a type-2 glycosyltransferase in the fish pathogen Flavobacterium psychrophilum determines pleiotropic changes and loss of virulence.	Perez-Pascual D, Gomez E, Guijarro JA.	Vet Res	10.1186/s13567-014-0124-5	2015
Altered fecal microbiota, IgA, and fermentative end-products in adult dogs fed prebiotics and a nonviable Lactobacillus acidophilus.	Panasevich MR, Daristotle L, Quesnell R, Reinhart GA, Frantz NZ.	J Anim Sci	10.1093/jas/skab347	2021
Primers for amplification of nitrous oxide reductase genes associated with Firmicutes and Bacteroidetes in organic-compound-rich soils.	Jung J, Choi S, Jung H, Scow KM, Park W.	Microbiology (Reading)	10.1099/mic.0.060194-0	2013
Characterization of a novel serine protease inhibitor gene from a marine metagenome.	Jiang CJ, Hao ZY, Zeng R, Shen PH, Li JF, Wu B.	Mar Drugs	10.3390/md9091487	2011
The effect of Lactobacillus reuteri supplementation in Helicobacter pylori infection: a placebo-controlled, single-blind study.	Buckley M, Lacey S, Doolan A, Goodbody E, Seamans K.	BMC Nutr	10.1186/s40795-018-0257-4	2018
Isolation and identification of cellulolytic bacteria from the gut of Holotrichia parallela larvae (Coleoptera: Scarabaeidae).	Huang S, Sheng P, Zhang H.	Int J Mol Sci	10.3390/ijms13032563	2012
Functional screening of metagenome and genome libraries for detection of novel flavonoid-modifying enzymes.	Rabausch U, Juergensen J, Ilmberger N, Bohnke S, Fischer S, Schubach B, Schulte M, Streit WR.	Appl Environ Microbiol	10.1128/aem.01077-13	2013
Exploring the host parasitism of the migratory plant-parasitic nematode Ditylenchus destuctor by expressed sequence tags analysis.	Peng H, Gao BL, Kong LA, Yu Q, Huang WK, He XF, Long HB, Peng DL.	PLoS One	10.1371/journal.pone.0069579	2013
PG1058 Is a Novel Multidomain Protein Component of the Bacterial Type IX Secretion System.	Heath JE, Seers CA, Veith PD, Butler CA, Nor Muhammad NA, Chen YY, Slakeski N, Peng B, Zhang L, Dashper SG, Cross KJ, Cleal SM, Moore C, Reynolds EC.	PLoS One	10.1371/journal.pone.0164313	2016
Lactobacillus reuteri DSM 17938 for managing infant colic: protocol for an individual participant data meta-analysis.	Sung V, Cabana MD, D'Amico F, Deshpande G, Dupont C, Indrio F, Mentula S, Partty A, Savino F, Szajewska H, Tancredi D.	BMJ Open	10.1136/bmjopen-2014-006475	2014
Bacterial and human peptidylarginine deiminases: targets for inhibiting the autoimmune response in rheumatoid arthritis?	Mangat P, Wegner N, Venables PJ, Potempa J.	Arthritis Res Ther	10.1186/ar3000	2010
Lengths of Orthologous Prokaryotic Proteins Are Affected by Evolutionary Factors.	Tatarinova T, Salih B, Dien Bard J, Cohen I, Bolshoy A.	Biomed Res Int	10.1155/2015/786861	2015
Biotechnological applications of functional metagenomics in the food and pharmaceutical industries.	Coughlan LM, Cotter PD, Hill C, Alvarez-Ordonez A.	Front Microbiol	10.3389/fmicb.2015.00672	2015
The efficacy of Lactobacillus reuteri DSM 17938 in infants and children: a review of the current evidence.	Urbanska M, Szajewska H.	Eur J Pediatr	10.1007/s00431-014-2328-0	2014
Lactobacillus reuteri Surface Mucus Adhesins Upregulate Inflammatory Responses Through Interactions With Innate C-Type Lectin Receptors.	Bene KP, Kavanaugh DW, Leclaire C, Gunning AP, MacKenzie DA, Wittmann A, Young ID, Kawasaki N, Rajnavolgyi E, Juge N.	Front Microbiol	10.3389/fmicb.2017.00321	2017
Biochemical Characterization of a Family 15 Carbohydrate Esterase from a Bacterial Marine Arctic Metagenome.	De Santi C, Willassen NP, Williamson A.	PLoS One	10.1371/journal.pone.0159345	2016
Characterization of the anti-inflammatory Lactobacillus reuteri BM36301 and its probiotic benefits on aged mice.	Lee J, Yang W, Hostetler A, Schultz N, Suckow MA, Stewart KL, Kim DD, Kim HS.	BMC Microbiol	10.1186/s12866-016-0686-7	2016
Methods of combinatorial optimization to reveal factors affecting gene length.	Bolshoy A, Tatarinova T.	Bioinform Biol Insights	10.4137/bbi.s10525	2012
Probiotics stimulate enterocyte migration and microbial diversity in the neonatal mouse intestine.	Preidis GA, Saulnier DM, Blutt SE, Mistretta TA, Riehle KP, Major AM, Venable SF, Finegold MJ, Petrosino JF, Conner ME, Versalovic J.	FASEB J	10.1096/fj.10-177980	2012
Cyclopropane fatty acid synthase mutants of probiotic human-derived Lactobacillus reuteri are defective in TNF inhibition.	Jones SE, Whitehead K, Saulnier D, Thomas CM, Versalovic J, Britton RA.	Gut Microbes	10.4161/gmic.2.2.15282	2011
A bacterial sulfonolipid triggers multicellular development in the closest living relatives of animals.	Alegado RA, Brown LW, Cao S, Dermenjian RK, Zuzow R, Fairclough SR, Clardy J, King N.	Elife	10.7554/elife.00013	2012
From prediction to function using evolutionary genomics: human-specific ecotypes of Lactobacillus reuteri have diverse probiotic functions.	Spinler JK, Sontakke A, Hollister EB, Venable SF, Oh PL, Balderas MA, Saulnier DM, Mistretta TA, Devaraj S, Walter J, Versalovic J, Highlander SK.	Genome Biol Evol	10.1093/gbe/evu137	2014
Enzymatic synthesis and characterization of fructooligosaccharides and novel maltosylfructosides by inulosucrase from Lactobacillus gasseri DSM 20604.	Diez-Municio M, de las Rivas B, Jimeno ML, Munoz R, Moreno FJ, Herrero M.	Appl Environ Microbiol	10.1128/aem.00854-13	2013
Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms.	Nasir A, Naeem A, Khan MJ, Nicora HD, Caetano-Anolles G.	Genes (Basel)	10.3390/genes2040869	2011
Human-derived probiotic Lactobacillus reuteri strains differentially reduce intestinal inflammation.	Liu Y, Fatheree NY, Mangalat N, Rhoads JM.	Am J Physiol Gastrointest Liver Physiol	10.1152/ajpgi.00124.2010	2010
Identification and characterization of cellobiose 2-epimerases from various aerobes.	Ojima T, Saburi W, Yamamoto T, Mori H, Matsui H	Biosci Biotechnol Biochem	10.1271/bbb.120742	2013
Dyadobacter luticola sp. nov., isolated from a sewage sediment sample.	Song Z, Song Y, Yu Y, Choi L, Wang G, Li M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.003178	2019
Selenobaculum gbiensis gen. nov. sp. nov., a new bacterium isolated from the gut microbiota of a patient with Crohn's disease.	Yeo S, Park H, Kim H, Ryu CB, Huh CS.	Sci Rep	10.1038/s41598-023-42017-0	2023
Dyadobacter endophyticus sp. nov., an endophytic bacterium isolated from maize root.	Gao JL, Sun P, Wang XM, Qiu TL, Lv FY, Yuan M, Yang MM, Sun JG	Int J Syst Evol Microbiol	10.1099/ijsem.0.001304	2016
Dyadobacter jiangsuensis sp. nov., a methyl red degrading bacterium isolated from a dye-manufacturing factory.	Wang L, Chen L, Ling Q, Li CC, Tao Y, Wang M	Int J Syst Evol Microbiol	10.1099/ijs.0.000069	2015
Dyadobacter soli sp. nov., a starch-degrading bacterium isolated from farm soil.	Lee M, Woo SG, Park J, Yoo SA	Int J Syst Evol Microbiol	10.1099/ijs.0.019653-0	2009
Dyadobacter beijingensis sp. nov., isolated from the rhizosphere of turf grasses in China.	Dong Z, Guo X, Zhang X, Qiu F, Sun L, Gong H, Zhang F	Int J Syst Evol Microbiol	10.1099/ijs.0.64754-0	2007

References

#7272	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18053
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#39632	; Curators of the CIP;
#43374	Marisa K. Chelius, Eric W. Triplett: Dyadobacter fermentans gen. nov., sp. nov., a novel Gram-negative bacterium isolated from surface-sterilized Zea mays stems. IJSEM 50: 751 - 758 2000 ( DOI 10.1099/00207713-50-2-751 , PubMed 10758885 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68369	Automatically annotated from API 20NE .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119308	Collection of Institut Pasteur ; Curators of the CIP; CIP 107007
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Dyadobacter fermentans (DSM 18053, ATCC 700827, CIP 107007)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API zym

API 20NE

API 50CHac

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000023125

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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