Name: Asaia astilbis T-6133
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 35

Type strain:

Species: Asaia astilbis

Strain Designation: T-6133

Culture col. no.: DSM 23030, JCM 15831

Strain history: T. Uchimura T-6133.

NCBI tax ID(s): 1236500 (strain), 610244 (species)

SI-ID 376896

JCM 15831, DSM 23030, LMG 26974

Other strains from Asaia astilbis

A. astilbis JCM 25445
A. astilbis JCM 25446

Section

Asaia astilbis T-6133 is a mesophilic, Gram-negative bacterium that was isolated from Astilbe thunbergii var. congesta.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Asaia*
	Species	**Asaia astilbis**
	Full Scientific Name (LPSN)	Asaia astilbis corrig. Suzuki et al. 2012

Synonym

Asaia astilbes

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.993

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16660]

Culture medium

ASAIA GYP MEDIUM (DSMZ Medium 1330)

[Ref.: #16660]

Culture medium growth

[Ref.: #16660]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16660]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16660]			growth	28 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #16660]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16660]	Sample type/isolated from	Astilbe thunbergii var. congesta
[Ref.: #16660]	Host species	Astilbe thunbergii var. congesta
[Ref.: #16660]	Geographic location (country and/or sea, region)	Yamanashi Prefecture
[Ref.: #16660]	Country	Japan
[Ref.: #16660]	Country ISO 3 Code	JPN
[Ref.: #16660]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Astilbe (Astilbe thunbergii var. congesta)
[Ref.: #67770]	Host species	Astilbe thunbergii var. congesta
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yamanashi
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB485740 (>99% sequence identity) for Asaia from Microbeatlas

Aquatic Samples	4167
Soil Samples	6137
Animal Samples	6615
Plant Samples	4906
Total Samples	21825

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16660]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16660]	Asaia astilbis JCM 15831 gene for 16S rRNA, partial sequence, strain: T-6133	AB485740	1407	ENA	1236500 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Asaia astilbis JCM 15831	GCA_000613845	contig	GenBank	1236500 tax ID
[Ref.: #66792]	Asaia astilbis JCM 15831	1236500.5	wgs	PATRIC	1236500 tax ID	*
[Ref.: #66792]	Asaia astilbes JCM 15831	2585427931	draft	JGI IMG/M	1236500 tax ID	*

[Ref.: #16660]

GC-content

58.9 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Asaia astilbis JCM 15831 PATRIC: 1236500.5
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Asaia astilbis JCM 15831 PATRIC: 1236500.5
[Ref.: #69480]	motile	yes	74.328	no
[Ref.: #69480]	gram-positive	no	97.562	no
[Ref.: #69480]	anaerobic	no	99.071	no
[Ref.: #69480]	aerobic	yes	85.613	no
[Ref.: #69480]	halophile	no	90.498	no
[Ref.: #69480]	spore-forming	no	94.709	no
[Ref.: #69480]	glucose-util	yes	92.423	no
[Ref.: #69480]	flagellated	no	74.757	no
[Ref.: #69480]	thermophile	no	93.891	yes
[Ref.: #69480]	glucose-ferment	no	87.628	no

Availability in culture collections External links

[Ref.: #16660]

Culture collection no.

DSM 23030, JCM 15831

[Ref.: #69720]

SI-ID 376896

References

#16660

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23030

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69720

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID376896.1 )

* These data were automatically processed and therefore are not curated

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Asaia astilbis JCM 15831

Asaia astilbis JCM 15831

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