Name: Corynebacterium pyruviciproducens 06-17730
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3237

Type strain:

Species: Corynebacterium pyruviciproducens

Strain Designation: 06-17730

Culture col. no.: DSM 45585, ATCC BAA-1742, CCUG 57046, JCM 17320, WAL 19168

Strain history: CCUG 57046 <-- S. M. Finegold 06-1773O <-- Olive View-UCLA Med. Center, CA, USA.

NCBI tax ID(s): 598660 (species)

SI-ID 408229

DSM 45585, CCUG 57046

Other strains from Corynebacterium pyruviciproducens

C. pyruviciproducens CCUG 44216
C. pyruviciproducens CCUG 44256 A
C. pyruviciproducens CCUG 49272
C. pyruviciproducens CCUG 57455
C. pyruviciproducens CCUG 58288
C. pyruviciproducens CCUG 63498
C. pyruviciproducens CCUG 64739
C. pyruviciproducens CCUG 64740
C. pyruviciproducens CCUG 64741

Section

Corynebacterium pyruviciproducens 06-17730 is an aerobe, mesophilic, Gram-positive human pathogen that was isolated from human abscess, groin.

Gram-positive
rod-shaped
aerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Corynebacteriaceae*
	Genus	*Corynebacterium*
	Species	**Corynebacterium pyruviciproducens**
	Full Scientific Name (LPSN)	Corynebacterium pyruviciproducens Tong et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29374]	Gram stain	positive

[Ref.: #29374]	Cell shape	rod-shaped

[Ref.: #29374]	Motility	no

[Ref.: #61173]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17715]

Culture medium

TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)

[Ref.: #17715]

Culture medium growth

[Ref.: #17715]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17715]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17715]	growth	37 °C
[Ref.: #29374]	growth	37-42 °C
[Ref.: #29374]	optimum	37 °C
[Ref.: #61173]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #17715]	Temperature range	mesophilic
[Ref.: #29374]	Temperature range	mesophilic
[Ref.: #61173]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29374]	Oxygen tolerance	aerobe
[Ref.: #61173]	Oxygen tolerance	microaerophile

[Ref.: #29374]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68379]	D-glucose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #29374]	glucose ChEBI	+	carbon source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #29374]	maltose ChEBI	+	carbon source
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #29374]	ribose ChEBI	+	carbon source
[Ref.: #29374]	sucrose ChEBI	+	carbon source
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #29374]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym, API Coryne
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #29374]	pyrazinamidase	+	3.5.1.B15
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #17715]	4219	-	-	-	-	+	-	-	-	-	-	-	-	+	+/-	+/-	-	+/-	-	+/-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #17715]	14102	-	-	+/-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17715]	Sample type/isolated from	human abscess, groin
[Ref.: #17715]	Geographic location (country and/or sea, region)	Los Angeles, UCLA Medical Center
[Ref.: #17715]	Country	USA
[Ref.: #17715]	Country ISO 3 Code	USA
[Ref.: #17715]	Continent	North America

[Ref.: #61173]	Sample type/isolated from	Human abscess,groin
[Ref.: #61173]	Sampling date	2006
[Ref.: #61173]	Geographic location (country and/or sea, region)	CA,Los Angeles
[Ref.: #61173]	Country	USA
[Ref.: #61173]	Country ISO 3 Code	USA
[Ref.: #61173]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Groin abscess specimen
[Ref.: #67770]	Geographic location (country and/or sea, region)	Olive View-UCLA Medical Center, Sylma, CA
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	-	-
#Host Body-Site	#Other	#Abscess

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ185225 (>99% sequence identity) for Corynebacterium pyruviciproducens subclade from Microbeatlas

Aquatic Samples	434
Soil Samples	198
Animal Samples	17530
Plant Samples	91
Total Samples	18253

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17715]	Pathogenicity (human)	yes, in single cases
[Ref.: #17715]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17715]	Corynebacterium pyruviciproducens ATCC BAA-1742 16S ribosomal RNA gene, partial sequence	FJ185225	1409	ENA	1125779 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Corynebacterium pyruviciproducens ATCC BAA-1742	GCA_000411375	scaffold	GenBank	1125779 tax ID

[Ref.: #17715]	GC-content	62 mol%
[Ref.: #67770]	GC-content	62 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Corynebacterium pyruviciproducens ATCC BAA-1742 ATCC BAA-1742 NCBI: GCA_000411375.1
[Ref.: #69480]	motile	no	95.108	yes
[Ref.: #69480]	flagellated	no	98.07	yes
[Ref.: #69480]	gram-positive	yes	93.02	yes
[Ref.: #69480]	anaerobic	no	96.573	yes
[Ref.: #69480]	aerobic	no	88.152	no
[Ref.: #69480]	halophile	no	71.782	no
[Ref.: #69480]	spore-forming	no	91.952	no
[Ref.: #69480]	thermophile	no	92.556	no
[Ref.: #69480]	glucose-util	yes	87.933	yes
[Ref.: #69480]	glucose-ferment	yes	71.197	yes

Availability in culture collections External links

[Ref.: #17715]

Culture collection no.

DSM 45585, ATCC BAA-1742, CCUG 57046, JCM 17320, WAL 19168

[Ref.: #72751]

SI-ID 408229

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Extended characterization of Corynebacterium pyruviciproducens based on clinical strains from Canada and Switzerland.	Goldenberger D, Hinic V, Turan S, Schultheiss E, Pacheco AL, Frei R, Bernard K	J Clin Microbiol	10.1128/JCM.00792-14	2014	*
Phylogeny	Corynebacterium pyruviciproducens sp. nov., a pyruvic acid producer.	Tong J, Liu C, Summanen PH, Xu H, Finegold SM	Int J Syst Evol Microbiol	10.1099/ijs.0.011783-0	2009	*

References

#17715

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45585

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29374

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25782 (see below)

#61173 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57046
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#72751

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408229.1 )

#25782

IJSEM 1135 2010 ( DOI 10.1099/ijs.0.011783-0 , PubMed 19666798 )

* These data were automatically processed and therefore are not curated

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Corynebacterium pyruviciproducens ATCC BAA-1742 ATCC BAA-1742

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