Achromobacter spanius (DSM 30031, ATCC 337, CCUG 228)

Name: Achromobacter spanius (DSM 30031, ATCC 337, CCUG 228)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 311

Type strain

Culture col. no. DSM 30031 ATCC 337 CCUG 228 NCTC 3233

NCBI tax ID(s) 217203

Special Collections DSMZ CCUG

History <- ATCC; ATCC 337 <- L. A. Rogers, USDA, United States Dept. Agric.; (Alcaligenes faecalis subsp. faecalis)

Links

Achromobacter spanius DSM 30031 is an aerobe bacterium that was isolated from ropy milk.

aerobe genome sequence Bacteria

Name and taxonomic classification

SI-ID 34599

ATCC 337,NCTC 3233,CCUG 228,DSM 30031

@ref 20215

Last LPSN update 2026-02-09 11:17:50

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Achromobacter

Species Achromobacter spanius

Full scientific name Achromobacter spanius Coenye et al. 2003

BacDive ID	Other strains from **Achromobacter spanius** (9)	Type strain
323	A. spanius CIP 108199, DSM 23806, CCUG 47062, LMG 5911, ... (type strain)
321	A. spanius B1b, DSM 11386
137206	A. spanius CIP 102201
144353	A. spanius CCUG 24722, LMG 14525
146580	A. spanius CCUG 31491
152566	A. spanius CCUG 47063, LMG 5896
152567	A. spanius CCUG 47064, LMG 5909
153058	A. spanius CCUG 48395
156470	A. spanius CCUG 61956, LMG 26683

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	90.1
125438	negative	96.432

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
68368	MacConkey medium			from API 20E
9093	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
9093	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
9093	positive	growth	30
44149	positive	growth	30-37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
44149	aerobe
125438	aerobe	93.324

Spore formation

@ref	Spore formation	Confidence
125439		96.2
125438		90.889

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
68374	29016 ChEBI	arginine	-	hydrolysis	from API ID32E
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68374	17057 ChEBI	cellobiose	-	builds acid from	from API ID32E
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68374	18333 ChEBI	D-arabitol	-	builds acid from	from API ID32E
68374	18024 ChEBI	D-galacturonic acid	-	builds acid from	from API ID32E
68374	17634 ChEBI	D-glucose	-	builds acid from	from API ID32E
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68368	17634 ChEBI	D-glucose	-	fermentation	from API 20E
68374	16899 ChEBI	D-mannitol	-	builds acid from	from API ID32E
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68368	16899 ChEBI	D-mannitol	-	fermentation	from API 20E
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68374	30849 ChEBI	L-arabinose	-	builds acid from	from API ID32E
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68374	18403 ChEBI	L-arabitol	-	builds acid from	from API ID32E
68374	62345 ChEBI	L-rhamnose	-	builds acid from	from API ID32E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68374	25094 ChEBI	lysine	-	degradation	from API ID32E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68374	15792 ChEBI	malonate	+	assimilation	from API ID32E
68374	17306 ChEBI	maltose	-	builds acid from	from API ID32E
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68374	17268 ChEBI	myo-inositol	-	builds acid from	from API ID32E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68368	17632 ChEBI	nitrate	-	reduction	from API 20E
68374	18257 ChEBI	ornithine	-	degradation	from API ID32E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68374	18394 ChEBI	palatinose	-	builds acid from	from API ID32E
68374		Potassium 5-ketogluconate	-	builds acid from	from API ID32E
68374	15963 ChEBI	ribitol	-	builds acid from	from API ID32E
68374	30911 ChEBI	sorbitol	-	builds acid from	from API ID32E
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68374	17992 ChEBI	sucrose	-	builds acid from	from API ID32E
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68374	27082 ChEBI	trehalose	-	builds acid from	from API ID32E
68374	27897 ChEBI	tryptophan	-	energy source	from API ID32E
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68374	16199 ChEBI	urea	-	hydrolysis	from API ID32E
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	17997 ChEBI	dinitrogen	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68369	35581 ChEBI	indole	from API 20NE
68374	35581 ChEBI	indole	from API ID32E
68368	35581 ChEBI	indole	from API 20E
68368	16301 ChEBI	nitrite	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
68374	35581 ChEBI	indole		-	from API ID32E
68369	35581 ChEBI	indole		-	from API 20NE
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68374	alpha-galactosidase	-	3.2.1.22	from API ID32E
68374	alpha-glucosidase	-	3.2.1.20	from API ID32E
68374	alpha-maltosidase	-		from API ID32E
68374	arginine dihydrolase	-	3.5.3.6	from API ID32E
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68374	beta-galactosidase	-	3.2.1.23	from API ID32E
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68374	beta-glucosidase	-	3.2.1.21	from API ID32E
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68374	beta-glucuronidase	-	3.2.1.31	from API ID32E
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68368	cytochrome oxidase	+	1.9.3.1	from API 20E
68369	gelatinase	-		from API 20NE
68368	gelatinase	-		from API 20E
68374	L-aspartate arylamidase	+	3.4.11.21	from API ID32E
68374	lipase	-		from API ID32E
68374	lysine decarboxylase	-	4.1.1.18	from API ID32E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68374	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API ID32E
68374	ornithine decarboxylase	-	4.1.1.17	from API ID32E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68369	urease	-	3.5.1.5	from API 20NE
68374	urease	-	3.5.1.5	from API ID32E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
9093	-	-	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	not determinedn.d.	+	not determinedn.d.	not determinedn.d.

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
44149	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	+	+

API ID32E

@ref	ODC	ADH (Arg)	LDC (Lys)	URE	LARL	GAT	5KG	LipaseLIP	Phenol red (Acidification)RP	beta GLU	MAN	MAL	ADO	PLE	beta GUR	MNT	IND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta GAL	GLU	SAC	LARA	DARL	alpha GLU	alpha GAL	TRE	RHA	INO	CEL	SOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
44149	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Dairy product
#Environmental	#Microbial community	-

Isolation

@ref	Sample type
9093	ropy milk
44149	Ropy milk

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	56279_F01 assembly for Achromobacter denitrificans NCTC3233	contig	GCA_900444685	32002.25	2814123178	32002	40.32

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Achromobacter denitrificans NCTC 3233
IMG: 2814123178

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.20	no
125439	motility	BacteriaNetⓘ	yes	75.90	no
125439	gram_stain	BacteriaNetⓘ	negative	90.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	87.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Achromobacter denitrificans strain NCTC3233
PATRIC: 32002.25

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.43	no
125438	anaerobic	anaerobicⓘ	no	98.26	yes
125438	spore-forming	spore-formingⓘ	no	90.89	no
125438	aerobic	aerobicⓘ	yes	93.32	yes
125438	thermophilic	thermophileⓘ	no	97.25	yes
125438	flagellated	motile2+ⓘ	yes	80.94	no

Literature

References

#9093	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30031
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#44149	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 228
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#68369	Automatically annotated from API 20NE .
#68374	Automatically annotated from API ID32E .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us