Simplicispira metamorpha (DSM 1837, ATCC 15280, IFO 12012)

Name: Simplicispira metamorpha (DSM 1837, ATCC 15280, IFO 12012)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2996

Type strain

Culture col. no. DSM 1837 ATCC 15280 IFO 12012 NBRC 12012 CCUG 13794 4 more

NCBI tax ID(s) 80881

Special Collections DSMZ CCUG CIP

History DSMZ <- ATCC <- Y. Terasaki (Spirillum metamorphum) CIP <- 2001, NCIMB <- Y. Terasaki, Spirillum metamorphum

Links

Simplicispira metamorpha DSM 1837 is a Gram-negative, motile, rod-shaped bacterium that was isolated from putrid infusion of a fresh-water shell fish.

Gram-negative motile rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 900

LMG 4338,ATCC 15280,CCUG 13794,DSM 1837,IFO 12012,LMG 4339,NCIB 9509,NCIMB 9509,IFO13960,VKM B-1407,CIP 107317,NBRC 13960,NBRC 12012,LMG 23381

@ref 20215

Last LPSN update 2026-05-29 08:25:36

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Simplicispira

Species Simplicispira metamorpha

Full scientific name Simplicispira metamorpha (Terasaki 1961) Grabovich et al. 2006

Synonyms (2)

"Spirillum metamorphum"
Aquaspirillum metamorphum

BacDive ID	Other strains from **Simplicispira metamorpha** (1)	Type strain
2997	S. metamorpha D-416, DSM 12826, CIP 109450

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
120921	negative	rod-shaped
125438	negative		98.902
125439	negative		98.51

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
40566	MEDIUM 14 - Williams and Rittenberg medium for Aquaspirillum genus		Distilled water make up to (1000.000 ml);Agar (13.000 g);Yeast extract (3.000 g);Peptone (5.000 g);Beef extract (3.000 g)
896	HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428)	Medium recipe at MediaDive	Name: HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428) Composition: Agar 19.802 g/l Na2HPO4 x 2 H2O 2.87129 g/l KH2PO4 2.27723 g/l D-Glucose 1.9802 g/l Na-lactate 0.990099 g/l Na-pyruvate 0.990099 g/l D-Mannitol 0.990099 g/l DL-Malate 0.990098 g/l Na-acetate 0.990098 g/l Yeast extract 0.990098 g/l NH4Cl 0.990098 g/l Disodium succinate 0.990098 g/l MgSO4 x 7 H2O 0.495049 g/l Ferric ammonium citrate 0.049505 g/l CaCl2 x 2 H2O 0.00990098 g/l NaVO3 x H2O 0.00495049 g/l Thiamine-HCl x 2 H2O 0.00247525 g/l Nicotinic acid 0.00247525 g/l Pyridoxine hydrochloride 0.00247525 g/l Calcium pantothenate 0.00247525 g/l H3BO3 0.00148515 g/l CoCl2 x 6 H2O 0.000990099 g/l Riboflavin 0.00049505 g/l ZnSO4 x 7 H2O 0.00049505 g/l MnCl2 x 4 H2O 0.000148515 g/l Na2MoO4 x 2 H2O 0.000148515 g/l NiCl2 x 6 H2O 9.90099e-05 g/l CuCl2 x 2 H2O 4.95049e-05 g/l Vitamin B12 4.95049e-05 g/l Folic acid 9.90099e-06 g/l Biotin 4.9505e-06 g/l Distilled water
896	ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7)	Medium recipe at MediaDive	Name: ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7) Composition: Agar 15.0 g/l Yeast extract 1.0 g/l Peptone 1.0 g/l Glucose 1.0 g/l Distilled water
896	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
120921	CIP Medium 14	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
896	positive	growth	30
40566	positive	growth	25
120921	positive	growth	15-37
120921	negative	growth	5
120921	negative	growth	41

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		93.888
125439		99.854

Halophily

@ref	Salt	Growth	Tested relation	Concentration
120921	NaCl	positive	growth	0-10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
120921	16947 ChEBI	citrate	-	carbon source
120921	4853 ChEBI	esculin	-	hydrolysis
120921	17234 ChEBI	glucose	-	fermentation
120921	17716 ChEBI	lactose	-	fermentation
120921	17632 ChEBI	nitrate	-	reduction
120921	17632 ChEBI	nitrate	-	respiration
120921	16301 ChEBI	nitrite	-	reduction
120921	132112 ChEBI	sodium thiosulfate	-	builds gas from

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120921	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
120921	15688 ChEBI	acetoin	-
120921	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
120921	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
120921	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
120921	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
120921	caseinase	+	3.4.21.50
120921	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
120921	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
120921	gamma-glutamyltransferase	-	2.3.2.2
120921	gelatinase	+/-
120921	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
120921	lipase	-
68382	lipase (C 14)	-		from API zym
120921	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120921	ornithine decarboxylase	-	4.1.1.17
120921	oxidase	+
120921	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
120921	tryptophan deaminase	-
120921	tween esterase	-
120921	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	adipate degradation	100	2 of 2
66794	suberin monomers biosynthesis	100	2 of 2
66794	butanoate fermentation	100	4 of 4
66794	valine metabolism	100	9 of 9
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	denitrification	100	2 of 2
66794	teichoic acid biosynthesis	100	1 of 1
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	taurine degradation	100	1 of 1
66794	sulfopterin metabolism	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ppGpp biosynthesis	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	phenylalanine metabolism	92.31	12 of 13
66794	threonine metabolism	90	9 of 10
66794	propionate fermentation	90	9 of 10
66794	lipid A biosynthesis	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	gluconeogenesis	87.5	7 of 8
66794	3-phenylpropionate degradation	86.67	13 of 15
66794	citric acid cycle	85.71	12 of 14
66794	photosynthesis	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	vitamin B1 metabolism	84.62	11 of 13
66794	peptidoglycan biosynthesis	80	12 of 15
66794	gallate degradation	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	methylglyoxal degradation	80	4 of 5
66794	flavin biosynthesis	80	12 of 15
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	vitamin B12 metabolism	79.41	27 of 34
66794	heme metabolism	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	leucine metabolism	76.92	10 of 13
66794	purine metabolism	75.53	71 of 94
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	isoleucine metabolism	75	6 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	tyrosine metabolism	71.43	10 of 14
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	methionine metabolism	69.23	18 of 26
66794	alanine metabolism	68.97	20 of 29
66794	androgen and estrogen metabolism	68.75	11 of 16
66794	tryptophan metabolism	68.42	26 of 38
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	cysteine metabolism	66.67	12 of 18
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	phenol degradation	65	13 of 20
66794	lipid metabolism	64.52	20 of 31
66794	pentose phosphate pathway	63.64	7 of 11
66794	vitamin B6 metabolism	63.64	7 of 11
66794	oxidative phosphorylation	62.64	57 of 91
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	pyrimidine metabolism	62.22	28 of 45
66794	non-pathway related	60.53	23 of 38
66794	lipoate biosynthesis	60	3 of 5
66794	glycolysis	58.82	10 of 17
66794	lysine metabolism	57.14	24 of 42
66794	proline metabolism	54.55	6 of 11
66794	arginine metabolism	54.17	13 of 24
66794	urea cycle	53.85	7 of 13
66794	sulfate reduction	53.85	7 of 13
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	histidine metabolism	51.72	15 of 29
66794	ethanol fermentation	50	1 of 2
66794	4-hydroxyphenylacetate degradation	50	5 of 10
66794	ribulose monophosphate pathway	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	Entner Doudoroff pathway	50	5 of 10
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	phenylmercury acetate degradation	50	1 of 2
66794	glycogen biosynthesis	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	degradation of sugar alcohols	50	8 of 16
66794	glycine metabolism	50	5 of 10
66794	ketogluconate metabolism	50	4 of 8
66794	nitrate assimilation	44.44	4 of 9
66794	glutathione metabolism	42.86	6 of 14
66794	bile acid biosynthesis, neutral pathway	41.18	7 of 17
66794	vitamin K metabolism	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	glycogen metabolism	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	3-chlorocatechol degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	starch degradation	40	4 of 10
66794	polyamine pathway	39.13	9 of 23
66794	cyanate degradation	33.33	1 of 3
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	sphingosine metabolism	33.33	2 of 6
66794	methane metabolism	33.33	1 of 3
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	pantothenate biosynthesis	33.33	2 of 6
66794	enterobactin biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	degradation of pentoses	28.57	8 of 28
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	arachidonic acid metabolism	27.78	5 of 18
66794	degradation of hexoses	27.78	5 of 18
66794	ascorbate metabolism	27.27	6 of 22
66794	metabolism of disaccharids	27.27	3 of 11
66794	cholesterol biosynthesis	27.27	3 of 11
66794	vitamin E metabolism	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	biotin biosynthesis	25	1 of 4
66794	carotenoid biosynthesis	22.73	5 of 22
66794	allantoin degradation	22.22	2 of 9

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120921	-	-	+	-	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
120921	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Freshwater
#Host	#Other	#Decomposing animal
#Host	#Invertebrates (Other)	-

Isolation

@ref	Sample type
896	putrid infusion of a fresh-water shell fish
46013	Putrid infusion of a fresh-water shell fish
120921	Putrid infusion of a freshwater shellfish

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
896	1	Risk group (German classification) According to TRBA 466
120921	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM434136v1 assembly for Simplicispira metamorpha DSM 1837	scaffold	GCA_004341365	80881.4	2795385460	80881	64.58
124043	ASM356872v2 assembly for Simplicispira metamorpha NBRC 13960	scaffold	GCA_003568725	80881.3	2833549814	80881	53.83

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Aquaspirillum metamorphum 16S rRNA gene	Y18618	1526	80881
20218	Aquaspirillum metamorphum 16S ribosomal RNA gene, partial sequence	AF078757	1437	80881
20218	Simplicispira metamorpha gene for 16S rRNA, partial sequence, strain: NBRC 13960	AB680538	1458	80881

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM434136v1 assembly for Simplicispira metamorpha DSM 1837
NCBI: GCA_004341365

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	70.45	no
125439	gram_stain	BacteriaNetⓘ	negative	98.51	no
125439	motility	BacteriaNetⓘ	yes	85.90	no
125439	spore_formation	BacteriaNetⓘ	no	99.85	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Simplicispira metamorpha DSM 1837
NCBI: GCA_004341365.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.90	no
125438	anaerobic	anaerobicⓘ	no	93.26	no
125438	aerobic	aerobicⓘ	yes	77.33	no
125438	spore-forming	spore-formingⓘ	no	93.89	no
125438	thermophilic	thermophileⓘ	no	95.07	yes
125438	flagellated	motile2+ⓘ	yes	78.07	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Simplicispira lacusdiani sp. nov., a novel betaproteobacterium isolated from a freshwater reservoir.	Shi YL, Sun Y, Jiang ZM, Ruan ZY, Su J, Yu LY, Zhang YQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003112	2018
Phylogeny	Simplicispira suum sp. nov., isolated from a dust collector at a pig farm.	Cho HY, Heo J, Hong SB, Kim JS, Kwon SW, Kim SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002874	2018
Phylogeny	Simplicispira soli sp. nov., a betaproteobacterium isolated from stream bank soil.	Dahal RH, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002618	2018
Phylogeny	Simplicispira limi sp. nov., isolated from activated sludge.	Lu S, Ryu SH, Chung BS, Chung YR, Park W, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.64566-0	2007

References

#896	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1837
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#40566	; Curators of the CIP;
#46013	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 13794
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68382	Automatically annotated from API zym .
#120921	Collection of Institut Pasteur ; Curators of the CIP; CIP 107317
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

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Simplicispira metamorpha (DSM 1837, ATCC 15280, IFO 12012)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API zym

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004341365

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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