Hydrogenophaga palleronii 362, Stanier 362 | Type strain | DSM 63, ATCC 17724

Strain identifier

BacDive ID: 2965

Type strain:

Species: Hydrogenophaga palleronii

Strain Designation: 362, Stanier 362

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #2046]	Domain	Bacteria
[Ref.: #2046]	Phylum	Proteobacteria
[Ref.: #2046]	Class	Betaproteobacteria
[Ref.: #2046]	Order	Burkholderiales
[Ref.: #2046]	Family	Comamonadaceae
[Ref.: #2046]	Genus	Hydrogenophaga
[Ref.: #2046]	Species	Hydrogenophaga palleronii
[Ref.: #2046]	Full Scientific Name	Hydrogenophaga palleronii (Davis 1970) Willems et al. 1989
[Ref.: #2046]	Strain Designation	362, Stanier 362
[Ref.: #2046]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Proteobacteria
[Ref.: #20215]	Class	Betaproteobacteria		Int. J. Syst. Evol. Microbiol. 56:1
[Ref.: #20215]	Family	Comamonadaceae
[Ref.: #20215]	Genus	Hydrogenophaga	gen. nov. (VP)	Int. J. Syst. Bacteriol. 39:329*
[Ref.: #20215]	Species	Hydrogenophaga palleronii	comb. nov. (VP)	Int. J. Syst. Bacteriol. 39:330*
[Ref.: #20215]	Full Scientific Name	Hydrogenophaga palleronii (Davis 1970) Willems et al. 1989

[Ref.: #20215]

Synonym

Pseudomonas palleronii

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #23086]	Gram stain	negative
[Ref.: #23086]	Cell length	0.6-5.5 µm
[Ref.: #23086]	Cell width	0.3-0.6 µm
[Ref.: #23086]	Cell shape	rod-shaped
[Ref.: #23086]	Motility	yes
[Ref.: #23086]	Flagellum arrangement	monotrichous

[Ref.: #2046]

Name of produced compound

polyhydroxyalkanoic acids

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #23086]		cytochrome oxidase	+	1.9.3.1

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23086]	2-Oxoglutaric acid	-	carbon source
[Ref.: #23086]	3-Aminobutyrate	-	growth
[Ref.: #23086]	5-Aminovaleric acid	-	growth
[Ref.: #23086]	Acetic acid	-	carbon source
[Ref.: #23086]	Aconitate	-	carbon source
[Ref.: #23086]	Azelaic acid	+	growth
[Ref.: #23086]	Butan-1-amine	-	growth
[Ref.: #23086]	Citric acid	-	carbon source
[Ref.: #23086]	D-Alanine	+	carbon source
[Ref.: #23086]	D-Arabitol	-	growth
[Ref.: #23086]	D-Cellobiose	-	growth
[Ref.: #23086]	D-Fructose	-	growth
[Ref.: #23086]	D-Galactose	-	growth
[Ref.: #23086]	D-Mannose	-	growth
[Ref.: #23086]	D-Turanose	-	growth
[Ref.: #23086]	D-Xylose	-	growth
[Ref.: #23086]	Ethanolamine	-	growth
[Ref.: #23086]	Glycolate	+	growth
[Ref.: #23086]	Isovalerate	+	carbon source
[Ref.: #23086]	Itaconic acid	+	carbon source
[Ref.: #23086]	L-Alanine	+	carbon source
[Ref.: #23086]	L-Arabinose	-	growth
[Ref.: #23086]	L-Fucose	-	growth
[Ref.: #23086]	L-Histidine	-	growth
[Ref.: #23086]	L-Isoleucine	+	carbon source
[Ref.: #23086]	L-Leucine	+	carbon source
[Ref.: #23086]	L-Norleucine	+	carbon source
[Ref.: #23086]	L-Phenylalanine	+	carbon source
[Ref.: #23086]	L-Tartrate	-	carbon source
[Ref.: #23086]	Lactose	-	growth
[Ref.: #23086]	Maltose	-	growth
[Ref.: #23086]	Mannitol	-	growth
[Ref.: #23086]	Nitrate	-	reduction
[Ref.: #23086]	Nitrite	-	reduction
[Ref.: #23086]	Norleucine	+	carbon source
[Ref.: #23086]	Pimelic acid	+	carbon source
[Ref.: #23086]	Sebacic acid	+	carbon source
[Ref.: #23086]	Sorbitol	-	growth
[Ref.: #23086]	Sucrose	-	growth
[Ref.: #23086]	Terephthalic acid	+	carbon source
[Ref.: #23086]	Valeric acid	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

[Ref.: #23086]	Nutrition type	chemoorganotroph
[Ref.: #23086]	Nutrition type	chemolithoautotroph

[Ref.: #23086]

Oxygen tolerance

aerobe

[Ref.: #23086]

Pigmentation color

nondiffusible yellow

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #2046]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1), 30°C

[Ref.: #2046]

Culture medium growth

[Ref.: #2046]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #2046]

Culture medium

MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81), 30°C

[Ref.: #2046]

Culture medium growth

[Ref.: #2046]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #35525]

Culture medium

MEDIUM 18 - for Hydrogenophaga, Vogesella and Pseudomonas genera

[Ref.: #35525]

Culture medium growth

[Ref.: #35525]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2046]			growth	30 ̊C
[Ref.: #35525]			growth	30 ̊C

[Ref.: #2046]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #23086]

Sample type/isolated from

water enriched for hydrogen bacteria

Isolation sources categories

#Environmental	#Aquatic	-
#Host-associates	#Microbial	#Bacteria

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #2046]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #2046]	GC-content	66.8 mol%
[Ref.: #23086]	GC-content	67.0 mol%	thermal denaturation, midpoint method (Tm)

Sequence information:

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Hydrogenophaga palleronii 16S ribosomal RNA gene, partial sequence	AF078769	1510	65655	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Hydrogenophaga palleronii 16S ribosomal RNA gene, complete sequence	AF019073	1481	65655	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Hydrogenophaga palleronii (strain LMG 2366t1) 5S ribosomal RNA	AJ131597	115	65655	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Hydrogenophaga palleronii gene for 16S rRNA, partial sequence, strain: NBRC 102513	AB681847	1454	65655	*

Availability in culture collectionsStrain availability

[Ref.: #2046]

Culture collection no.

DSM 63, ATCC 17724

[Ref.: #2046]

Strain history

<- IMG <- R.Y. Stanier, 362 <- N.J. Palleroni

[Ref.: #20218]

Associated Passport(s) in StrainInfo

52489, 52484

References

#2046

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 63

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23086

A. Willems,J. Busse,M. Goor,B. Pot,E. Falsen,E. Jantzen,B. Hoste,M. Gillis,K. Kersters,G. Auling,J. De Ley: Hydrogenophaga, a New Genus of Hydrogen-Oxidizing Bacteria That Includes Hydrogenophaga flava comb. nov. (Formerly Pseudomonas flava), Hydrogenophaga palleronii (Formerly Pseudomonas palleronii), Hydrogenophaga pseudoflava (Formerly Pseudomonas pseudoflava and ?Pseudomonas carboxydoflava?), and Hydrogenophaga taeniospiralis (Formerly Pseudomonas taeniospiralis). IJSEM 39: 319 - 333 1989 ( DOI 10.1099/00207713-39-3-319 )

#35525 ; Curators of the CIP;
* These References are textmined

Search for species Hydrogenophaga palleronii in external resources:
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