Name: Hydrogenophaga palleronii 362
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2965

Type strain:

Species: Hydrogenophaga palleronii

Strain Designation: 362

Culture col. no.: DSM 63, ATCC 17724, Stanier 362, JCM 21412, BCRC 13886, CCM 4454, CCUG 1780, CCUG 20334, CECT 4107, CFBP 2445, CIP 103304, IAM 14930, LMG 2366, NBRC 102513, VKM B-1328

Strain history: IAM 14930 <-- DSM 63 <-- IMG <-- R. Y. Stanier 362 <-- N. J. Palleroni.

NCBI tax ID(s): 1349791 (strain), 65655 (species)

Other strains from Hydrogenophaga palleronii

H. palleronii 16-0-1, 366, DSM 650, ATCC 17728
H. palleronii CCUG 20338, LMG 6348
H. palleronii CCUG 52433

Section

Hydrogenophaga palleronii 362 is an aerobe, chemoorganotroph, mesophilic bacterium that has a nondiffusible yellow pigmentation and was isolated from water enriched for hydrogen bacteria.

Gram-negative
motile
pigmented
rod-shaped
aerobe
chemoorganotroph
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Hydrogenophaga*
	Species	**Hydrogenophaga palleronii**
	Full Scientific Name (PNU)	Hydrogenophaga palleronii (Davis 1970) Willems et al. 1989

Synonym

Pseudomonas palleronii

Information on morphological and physiological properties Morphology

[Ref.: #23086]	Gram stain	negative
[Ref.: #23086]	Cell length	0.6-5.5 µm
[Ref.: #23086]	Cell width	0.3-0.6 µm
[Ref.: #23086]	Cell shape	rod-shaped
[Ref.: #23086]	Motility	yes
[Ref.: #23086]	Flagellum arrangement	monotrichous

[Ref.: #23086]	Pigment production	yes
[Ref.: #23086]	Pigmentation color	nondiffusible yellow

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2046]

Culture medium

MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81)

[Ref.: #2046]

Culture medium growth

[Ref.: #2046]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #2046]

Culture medium composition

expand / minimize

[Ref.: #2046]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #2046]

Culture medium growth

[Ref.: #2046]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #2046]

Culture medium composition

expand / minimize

[Ref.: #35525]

Culture medium

MEDIUM 18 - for Hydrogenophaga, Vogesella and Pseudomonas genera

[Ref.: #35525]

Culture medium growth

[Ref.: #35525]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #2046]	growth	30 °C
[Ref.: #35525]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #2046]	Temperature range	mesophilic
[Ref.: #35525]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23086]

Oxygen tolerance

aerobe

[Ref.: #23086]	Nutrition type	chemoorganotroph
[Ref.: #23086]	Nutrition type	chemolithoautotroph

[Ref.: #2046]

Name of produced compound

polyhydroxyalkanoic acids

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23086]	2-oxoglutarate ChEBI	-	carbon source
[Ref.: #23086]	3-aminobutyrate ChEBI	-	growth
[Ref.: #23086]	5-aminovaleric acid ChEBI	-	growth
[Ref.: #23086]	acetate ChEBI	-	carbon source
[Ref.: #23086]	aconitate ChEBI	-	carbon source
[Ref.: #23086]	azelaate ChEBI	+	growth
[Ref.: #23086]	butan-1-amine ChEBI	-	growth
[Ref.: #23086]	cellobiose ChEBI	-	growth
[Ref.: #23086]	citrate ChEBI	-	carbon source
[Ref.: #23086]	D-alanine ChEBI	+	carbon source
[Ref.: #23086]	D-arabitol ChEBI	-	growth
[Ref.: #23086]	D-fructose ChEBI	-	growth
[Ref.: #23086]	D-galactose ChEBI	-	growth
[Ref.: #23086]	D-mannose ChEBI	-	growth
[Ref.: #23086]	D-xylose ChEBI	-	growth
[Ref.: #23086]	ethanolamine ChEBI	-	growth
[Ref.: #23086]	glycolate ChEBI	+	growth
[Ref.: #23086]	isovalerate ChEBI	+	carbon source
[Ref.: #23086]	itaconate ChEBI	+	carbon source
[Ref.: #23086]	L-alanine ChEBI	+	carbon source
[Ref.: #23086]	L-arabinose ChEBI	-	growth
[Ref.: #23086]	L-fucose ChEBI	-	growth
[Ref.: #23086]	L-histidine ChEBI	-	growth
[Ref.: #23086]	L-isoleucine ChEBI	+	carbon source
[Ref.: #23086]	L-leucine ChEBI	+	carbon source
[Ref.: #23086]	L-norleucine ChEBI	+	carbon source
[Ref.: #23086]	L-phenylalanine ChEBI	+	carbon source
[Ref.: #23086]	L-tartrate ChEBI	-	carbon source
[Ref.: #23086]	lactose ChEBI	-	growth
[Ref.: #23086]	maltose ChEBI	-	growth
[Ref.: #23086]	mannitol ChEBI	-	growth
[Ref.: #23086]	nitrate ChEBI	-	reduction
[Ref.: #23086]	nitrite ChEBI	-	reduction
[Ref.: #23086]	norleucine ChEBI	+	carbon source
[Ref.: #23086]	pimelate ChEBI	+	carbon source
[Ref.: #23086]	sebacic acid ChEBI	+	carbon source
[Ref.: #23086]	sorbitol ChEBI	-	growth
[Ref.: #23086]	sucrose ChEBI	-	growth
[Ref.: #23086]	terephthalate ChEBI	+	carbon source
[Ref.: #23086]	turanose ChEBI	-	growth
[Ref.: #23086]	valerate ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #23086]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23086]	Sample type/isolated from	water enriched for hydrogen bacteria

[Ref.: #2046]	Sample type/isolated from	water

[Ref.: #67770]	Sample type/isolated from	Atmosphere of 6% O₂
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Host	#Microbial	#Bacteria

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF078769 (>99% sequence identity) for Hydrogenophaga from Microbeatlas

Aquatic Samples	1
Soil Samples
Animal Samples
Plant Samples
Total Samples	1

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2046]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Hydrogenophaga palleronii 16S ribosomal RNA gene, partial sequence	AF078769	1510	ENA	65655 tax ID	*
[Ref.: #20218]	Hydrogenophaga palleronii 16S ribosomal RNA gene, complete sequence	AF019073	1481	ENA	65655 tax ID	*
[Ref.: #20218]	Hydrogenophaga palleronii gene for 16S rRNA, partial sequence, strain: NBRC 102513	AB681847	1454	ENA	65655 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Hydrogenophaga palleronii NBRC 102513	1349791.3	wgs	PATRIC	1349791 tax ID	*
[Ref.: #66792]	Hydrogenophaga palleronii NBRC 102513	2681813002	draft	JGI IMG/M	1349791 tax ID	*
[Ref.: #67770]	Hydrogenophaga palleronii NBRC 102513 NBRC 102513	GCA_001571225	contig	GenBank	1349791 tax ID
[Ref.: #66792]	Anaerolineae bacterium S143_35	GCA_015489355	contig	PATRIC	2052143 tax ID	*

[Ref.: #23086]	GC-content	67.0 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #2046]	GC-content	66.8 mol%

Availability in culture collections External links

[Ref.: #2046]

Culture collection no.

DSM 63, ATCC 17724, Stanier 362, JCM 21412, BCRC 13886, CCM 4454, CCUG 1780, CCUG 20334, CECT 4107, CFBP 2445, CIP 103304, IAM 14930, LMG 2366, NBRC 102513, VKM B-1328

[Ref.: #20218]

Associated Passport(s) in StrainInfo

52489, 52484

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hydrogenophaga temperata sp. nov., a betaproteobacterium isolated from compost in Korea.	Kim YJ, Kim MK, Weon HY, Kim HB, Yang DC	J Gen Appl Microbiol	10.2323/jgam.56.419	2010	*
Phylogeny	Hydrogenophaga borbori sp. nov., isolated from activated sludge.	Choi GM, Lee SY, Kim SY, Wee JH, Im WT	Int J Syst Evol Microbiol	10.1099/ijsem.0.003787	2020	*
Phylogeny	Hydrogenophaga aromaticivorans sp. nov., isolated from a para-xylene-degrading enrichment culture, capable of degrading benzene, meta- and para-xylene.	Banerjee S, Tancsics A, Toth E, Revesz F, Boka K, Kriszt B	Int J Syst Evol Microbiol	10.1099/ijsem.0.004743	2021	*

References

#2046

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 63

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23086

A. Willems,J. Busse,M. Goor,B. Pot,E. Falsen,E. Jantzen,B. Hoste,M. Gillis,K. Kersters,G. Auling,J. De Ley: Hydrogenophaga, a New Genus of Hydrogen-Oxidizing Bacteria That Includes Hydrogenophaga flava comb. nov. (Formerly Pseudomonas flava), Hydrogenophaga palleronii (Formerly Pseudomonas palleronii), Hydrogenophaga pseudoflava (Formerly Pseudomonas pseudoflava and 'Pseudomonas carboxydoflava'), and Hydrogenophaga taeniospiralis (Formerly Pseudomonas taeniospiralis). IJSEM 39: 319 - 333 1989 ( DOI 10.1099/00207713-39-3-319 )

#35525 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Hydrogenophaga palleronii in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF