Acidovorax radicis (DSM 23535, LMG 25767, N35)

Name: Acidovorax radicis (DSM 23535, LMG 25767, N35)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2905

Type strain

Strain Designation N35

Culture col. no. DSM 23535 LMG 25767 N35

NCBI tax ID(s) 758826

Special Collections DSMZ Literature strains

History DSMZ <- A. Hartmann, Helmholtz-Zentrum München, Dept. Microbe-Plant Interactions; N35 <- I. Klein

Links

Acidovorax radicis N35 is an aerobe, Gram-negative, motile bacterium that was isolated from surface sterilized wheat root (Triticum aestivum var. Naxos.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 406929

LMG 25767,DSM 23535

@ref 20215

Last LPSN update 2026-05-29 08:25:34

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Acidovorax

Species Acidovorax radicis

Full scientific name Acidovorax radicis Li et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
23078	negative	1.5-2.0 µm	0.3-0.5 µm	rod-shaped
125438	negative				98
125439	negative				91.365

Colony morphology

@ref	Incubation period	Medium used
23078	2 days	NB agar

Multimedia

@ref:	17264
multimedia content:	DSM_23535.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_23535.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
17264	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
23078	NB agar
17264	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17264	positive	growth	28
23078	positive	growth	10.0-35.0
23078	positive	optimum	30.0

Culture pH

@ref	Ability	Type	PH	PH range
23078	positive	optimum	7.0
23078	positive	growth	5.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
23078	aerobe
125439	obligate aerobe	91.315

Spore formation

@ref	Spore formation	Confidence
125439		99.605

Halophily

@ref	Salt	Growth	Tested relation	Concentration
23078	NaCl		optimum	0.0 %
23078	NaCl	positive	growth	0.0-2.0 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23078	62064 ChEBI	2,3-butanediol	-	carbon source
23078	64552 ChEBI	2-hydroxybutyrate	+	carbon source
23078	16763 ChEBI	2-oxobutanoate	+	carbon source
23078	30916 ChEBI	2-oxoglutarate	-	carbon source
23078	28644 ChEBI	2-oxopentanoate	-	carbon source
23078	37054 ChEBI	3-hydroxybutyrate	+	carbon source
23078	18240 ChEBI	4-hydroxy-L-proline	+	carbon source
23078	16724 ChEBI	4-hydroxybutyrate	-	carbon source
23078	18101 ChEBI	4-hydroxyphenylacetic acid	+	carbon source
23078	30089 ChEBI	acetate	+	carbon source
23078	40585 ChEBI	alpha-cyclodextrin	-	carbon source
23078	17925 ChEBI	alpha-D-glucose	+	carbon source
23078	73706 ChEBI	bromosuccinate	+	carbon source
23078		casein	-	hydrolysis
23078	17057 ChEBI	cellobiose	-	carbon source
23078	16383 ChEBI	cis-aconitate	-	carbon source
23078	16947 ChEBI	citrate	-	carbon source
23078	15570 ChEBI	D-alanine	+	carbon source
23078	18333 ChEBI	D-arabitol	+	carbon source
23078	15824 ChEBI	D-fructose	+	carbon source
23078	15895 ChEBI	D-galactonic acid lactone	-	carbon source
23078	12936 ChEBI	D-galactose	+	carbon source
23078	18024 ChEBI	D-galacturonic acid	-	carbon source
23078	30612 ChEBI	D-glucarate	-	carbon source
23078	8391 ChEBI	D-gluconate	+	carbon source
23078	17784 ChEBI	D-glucosaminic acid	-	carbon source
23078	14314 ChEBI	D-glucose 6-phosphate	-	carbon source
23078	15748 ChEBI	D-glucuronate	-	carbon source
23078	16899 ChEBI	D-mannitol	+	carbon source
23078	16024 ChEBI	D-mannose	+	carbon source
23078	27605 ChEBI	D-psicose	+	carbon source
23078	16523 ChEBI	D-serine	-	carbon source
23078	17924 ChEBI	D-sorbitol	+	carbon source
23078	23652 ChEBI	dextrin	-	carbon source
23078	17126 ChEBI	DL-carnitine	-	carbon source
23078	17113 ChEBI	erythritol	-	carbon source
23078	16000 ChEBI	ethanolamine	-	carbon source
23078	15740 ChEBI	formate	+	carbon source
23078	16865 ChEBI	gamma-aminobutyric acid	+	carbon source
23078	28066 ChEBI	gentiobiose	-	carbon source
23078	29042 ChEBI	glucose 1-phosphate	-	carbon source
23078	32323 ChEBI	glucuronamide	-	carbon source
23078	17754 ChEBI	glycerol	+	carbon source
23078	14336 ChEBI	glycerol 1-phosphate	-	carbon source
23078	28087 ChEBI	glycogen	-	carbon source
23078	73804 ChEBI	glycyl L-aspartic acid	-	carbon source
23078	73784 ChEBI	glycyl-l-glutamate	+	carbon source
23078	17596 ChEBI	inosine	-	carbon source
23078	17240 ChEBI	itaconate	-	carbon source
23078	21217 ChEBI	L-alaninamide	-	carbon source
23078	16977 ChEBI	L-alanine	+	carbon source
23078	73786 ChEBI	L-alanylglycine	+	carbon source
23078	30849 ChEBI	L-arabinose	+	carbon source
23078	17196 ChEBI	L-asparagine	+	carbon source
23078	29991 ChEBI	L-aspartate	+	carbon source
23078	18287 ChEBI	L-fucose		carbon source
23078	29985 ChEBI	L-glutamate	+	carbon source
23078	15971 ChEBI	L-histidine	+	carbon source
23078	15603 ChEBI	L-leucine	+	carbon source
23078	15729 ChEBI	L-ornithine	-	carbon source
23078	17295 ChEBI	L-phenylalanine	+	carbon source
23078	17203 ChEBI	L-proline	+	carbon source
23078	18183 ChEBI	L-pyroglutamic acid	-	carbon source
23078	62345 ChEBI	L-rhamnose	-	carbon source
23078	17115 ChEBI	L-serine	-	carbon source
23078	16857 ChEBI	L-threonine	+	carbon source
23078	24996 ChEBI	lactate	+	carbon source
23078	17716 ChEBI	lactose	-	carbon source
23078	6359 ChEBI	lactulose	-	carbon source
23078	15792 ChEBI	malonate	-	carbon source
23078	17306 ChEBI	maltose	-	carbon source
23078	28053 ChEBI	melibiose	-	carbon source
23078	320055 ChEBI	methyl beta-D-glucopyranoside	-	carbon source
23078	51850 ChEBI	methyl pyruvate	+	carbon source
23078	75146 ChEBI	monomethyl succinate	+	carbon source
23078	17268 ChEBI	myo-inositol	-	carbon source
23078	28037 ChEBI	N-acetylgalactosamine	-	carbon source
23078	506227 ChEBI	N-acetylglucosamine	-	carbon source
23078	50048 ChEBI	phenylethylamine	-	carbon source
23078	17272 ChEBI	propionate	+	carbon source
23078	17148 ChEBI	putrescine	-	carbon source
23078	26490 ChEBI	quinate	+	carbon source
23078	16634 ChEBI	raffinose	-	carbon source
23078	15963 ChEBI	ribitol	-	carbon source
23078	41865 ChEBI	sebacic acid	+	carbon source
23078	143136 ChEBI	succinamate	+	carbon source
23078	30031 ChEBI	succinate	+	carbon source
23078	17992 ChEBI	sucrose	-	carbon source
23078	17748 ChEBI	thymidine	-	carbon source
23078	27082 ChEBI	trehalose	-	carbon source
23078	35020 ChEBI	tributyrin	+	hydrolysis
23078	32528 ChEBI	turanose	-	carbon source
23078	53423 ChEBI	tween 40	+	carbon source
23078	53426 ChEBI	tween 80	+	carbon source
23078	16704 ChEBI	uridine	-	carbon source
23078	27248 ChEBI	urocanic acid	+	carbon source
23078	17151 ChEBI	xylitol	-	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
23078	26672 ChEBI	siderophore

Enzymes

@ref	Value	Activity	Ec
23078	catalase	-	1.11.1.6
23078	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture
17264	surface sterilized wheat root (Triticum aestivum var. Naxos	Triticum aestivum var. Naxos	Neumarkt near Munich	Germany	DEU	Europe
23078	surface-sterilized wheat roots (4-week-old wheat plants Triticum aestivum)						NB (nutrient broth no. 4; Fluka) agar

Taxonmaps

69479

Global distribution of 16S sequence HM027578 (>99% sequence identity) for Acidovorax from Microbeatlas

Aquatic Samples	28
Soil Samples	3
Animal Samples	4
Plant Samples	4
Total Samples	39

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17264	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM20419v1 assembly for Acidovorax radicis N35	contig	GCA_000204195	999386.3	2547132374	999386	72.49

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17264	Acidovorax radicis strain N35 16S ribosomal RNA gene, partial sequence	HM027578	1492		999386

GC content

@ref	GC-content (mol%)	Method
17264	64.9	sequence analysis
23078	64.9	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM20419v1 assembly for Acidovorax radicis N35
NCBI: GCA_000204195

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.32	no
125439	gram_stain	BacteriaNetⓘ	negative	91.37	no
125439	motility	BacteriaNetⓘ	yes	84.33	no
125439	spore_formation	BacteriaNetⓘ	no	99.61	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acidovorax radicis N35
PATRIC: 999386.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	96.46	yes
125438	aerobic	aerobicⓘ	yes	87.48	no
125438	spore-forming	spore-formingⓘ	no	88.32	no
125438	thermophilic	thermophileⓘ	no	99.50	yes
125438	flagellated	motile2+ⓘ	yes	85.45	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Identification of NpdA as the protein forming the surface layer in Paracidovorax citrulli and evidence of its occurrence as a surface layer protein in diverse genera of the Betaproteobacteria and Gammaproteobacteria.	Gajbhiye S, Gonzales ED, Toso DB, Kirk NA, Hickey WJ.	Access Microbiol	10.1099/acmi.0.000685.v3	2023
	Genome-Based Characterization of Plant-Associated Rhodococcus qingshengii RL1 Reveals Stress Tolerance and Plant-Microbe Interaction Traits.	Kuhl T, Chowdhury SP, Uhl J, Rothballer M.	Front Microbiol	10.3389/fmicb.2021.708605	2021
	Novel Pseudomonas sp. SCA7 Promotes Plant Growth in Two Plant Families and Induces Systemic Resistance in Arabidopsis thaliana.	Kuhl-Nagel T, Rodriguez PA, Gantner I, Chowdhury SP, Schwehn P, Rosenkranz M, Weber B, Schnitzler JP, Kublik S, Schloter M, Rothballer M, Falter-Braun P.	Front Microbiol	10.3389/fmicb.2022.923515	2022
	Acidovorax benzenivorans sp. nov., a novel aromatic hydrocarbon-degrading bacterium isolated from a xylene-degrading enrichment culture.	Bedics A, Tancsics A, Banerjee S, Toth E, Harkai P, Gottschall GG, Boka K, Kriszt B.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006219	2024
Genetics	Acidovorax bellezanensis sp. nov., a novel bacterium from uranium mill tailings repository sites with selenium bioremediation capabilities.	Sanchez-Castro I, Viver T, Martinez-Rodriguez P, Bustos-Caparros E, Ruiz-Fresneda MA, Mena-Sanabria MT, Jimenez-Garcia I, Bosch-Estevez G, Descostes M, Merroun ML.	Heliyon	10.1016/j.heliyon.2024.e33171	2024
Phylogeny	Acidovorax radicis sp. nov., a wheat-root-colonizing bacterium.	Li D, Rothballer M, Schmid M, Esperschutz J, Hartmann A	Int J Syst Evol Microbiol	10.1099/ijs.0.025296-0	2010

References

#17264	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23535
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23078	Dan Li,Michael Rothballer,Michael Schmid,Jürgen Esperschütz,Anton Hartmann: Acidovorax radicis sp. nov., a wheat-root-colonizing bacterium. IJSEM 61: 2589 - 2594 2011 ( DOI 10.1099/ijs.0.025296-0 , PubMed 21131505 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Acidovorax radicis (DSM 23535, LMG 25767, N35)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000204195

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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