Name: Mediterraneibacter glycyrrhizinilyticus ZM35
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2835

Type strain:

Species: Mediterraneibacter glycyrrhizinilyticus

Strain Designation: ZM35

Culture col. no.: DSM 17593, JCM 13368

Strain history: K. Sakuma ZM35.

NCBI tax ID(s): 342942 (species)

SI-ID 389269

JCM13368, DSM 17593

Other strains from Mediterraneibacter glycyrrhizinilyticus

M. glycyrrhizinilyticus JCM 13369

Section

Mediterraneibacter glycyrrhizinilyticus ZM35 is an anaerobe, mesophilic bacterium that was isolated from human feces from a healthy 51 years old man.

anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Mediterraneibacter*
	Species	**Mediterraneibacter glycyrrhizinilyticus**
	Full Scientific Name (LPSN)	Mediterraneibacter glycyrrhizinilyticus (Sakuma et al. 2006) Togo et al. 2019

Synonym

Clostridium glycyrrhizinilyticum

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7078]

Culture medium

PY + X MEDIUM (DSMZ Medium 104b)

[Ref.: #7078]

Culture medium growth

[Ref.: #7078]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7078]

Culture medium composition

expand / minimize

[Ref.: #7078]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #7078]

Culture medium growth

[Ref.: #7078]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7078]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7078]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #7078]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7078]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7078]	Sample type/isolated from	human feces from a healthy 51 years old man
[Ref.: #7078]	Country	Japan
[Ref.: #7078]	Country ISO 3 Code	JPN
[Ref.: #7078]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Human feces
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB233029 (>99% sequence identity) for Mediterraneibacter glycyrrhizinilyticus subclade from Microbeatlas

Aquatic Samples	57
Soil Samples	28
Animal Samples	7055
Plant Samples	5
Total Samples	7145

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7078]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7078]	Clostridium glycyrrhizinilyticum gene for 16S ribosomal RNA	AB233029	1493	ENA	342942 tax ID

[Ref.: #7078]	GC-content	45.7 mol%
[Ref.: #67770]	GC-content	45.7 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #7078]

Culture collection no.

DSM 17593, JCM 13368

[Ref.: #72359]

SI-ID 389269

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Mediterraneibacter massiliensis, gen. nov., sp. nov., a new genus isolated from the gut microbiota of an obese patient and reclassification of Ruminococcus faecis, Ruminococcus lactaris, Ruminococcus torques, Ruminococcus gnavus and Clostridium glycyrrhizinilyticum as Mediterraneibacter faecis comb. nov., Mediterraneibacter lactaris comb. nov., Mediterraneibacter torques comb. nov., Mediterraneibacter gnavus comb. nov. and Mediterraneibacter glycyrrhizinilyticus comb. nov.	Togo AH, Diop A, Bittar F, Maraninchi M, Valero R, Armstrong N, Dubourg G, Labas N, Richez M, Delerce J, Levasseur A, Fournier PE, Raoult D, Million M	Antonie Van Leeuwenhoek	10.1007/s10482-018-1104-y	2018	*
Phylogeny	Clostridium glycyrrhizinilyticum sp. nov., a glycyrrhizin-hydrolysing bacterium isolated from human faeces.	Sakuma K, Kitahara M, Kibe R, Sakamoto M, Benno Y	Microbiol Immunol	10.1111/j.1348-0421.2006.tb03818.x	2006	*

References

#7078

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17593

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#72359

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389269.1 )

* These data were automatically processed and therefore are not curated

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