Name: Clostridium putrificum 2318
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2713

Type strain:

Species: Clostridium putrificum

Strain Designation: 2318, Prévot, 2318, Prévot, Prévot 2318

Culture col. no.: DSM 1734, ATCC 25784, NCIB 10677, Prevot 2318, VPI 4440-1, CCUG 15942, JCM 1410, BCRC 14514, CIP 60.54, NCIMB 10677, NCTC 13037, VPI 4440

Strain history: CIP <- 1960, A.R. Prévot, Inst. Pasteur, Paris, France: strain 2318, Plectridium putrificum

NCBI tax ID(s): 1491 (species)

SI-ID 38669

ATCC 25784, DSM 1734, NCIB 10677, JCM 1410, CCRC 14514, CCUG 15942, NCIMB 10677, BCRC 14514, NCTC 13037, CIP 60.54

Section

Clostridium putrificum 2318 is an anaerobe, spore-forming, mesophilic bacterium of the family Clostridiaceae.

motile
spore-forming
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	Clostridium putrificum
	Full Scientific Name (LPSN)	Clostridium putrificum (Trevisan 1889) Reddish and Rettger 1922 (Approved Lists 1980)

Synonym

"Pacinia putrifica"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %93.385

Information on culture and growth conditions Culture and growth conditions

[Ref.: #889]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #889]

Culture medium growth

[Ref.: #889]

Culture medium link

Medium recipe at MediaDive

[Ref.: #889]

Culture medium composition

expand / minimize

[Ref.: #37606]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #37606]

Culture medium growth

[Ref.: #37606]

Culture medium composition

expand / minimize

[Ref.: #122077]

Culture medium

CIP Medium 20

[Ref.: #122077]

Culture medium growth

[Ref.: #122077]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #889]	growth	37 °C
[Ref.: #37606]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #889]	Temperature range	mesophilic
[Ref.: #37606]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #889]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.999

[Ref.: #69481]	Ability of spore formation	yes Confidence in %93
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #122077]	Sample type/isolated from	Human, Blood
[Ref.: #122077]	Geographic location (country and/or sea, region)	Dakar
[Ref.: #122077]	Country	Senegal
[Ref.: #122077]	Country ISO 3 Code	SEN
[Ref.: #122077]	Continent	Africa
[Ref.: #122077]	Isolation date	1960

[Ref.: #37606]	Geographic location (country and/or sea, region)	Dakar
[Ref.: #37606]	Country	Senegal
[Ref.: #37606]	Country ISO 3 Code	SEN
[Ref.: #37606]	Continent	Africa
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB558161 (>99% sequence identity) for Clostridium from Microbeatlas

Aquatic Samples	3962
Soil Samples	4923
Animal Samples	31978
Plant Samples	1109
Total Samples	41972

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #889]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #122077]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Clostridium sporogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 1410	AB558161	1473	ENA	1509 tax ID
[Ref.: #889]	Clostridium botulinum 16S rRNA gene, strain DSM 1734	X73442	1513	ENA	1491 tax ID
[Ref.: #20218]	Clostridium botulinum strain ATCC 25784 16S ribosomal RNA gene, partial sequence	DQ911257	318	ENA	1491 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Clostridium botulinum strain NCTC13037	1491.1062	wgs	PATRIC	1491 tax ID	*
[Ref.: #66792]	Clostridium sporogenes strain FDAARGOS_1532	1509.235	complete	PATRIC	1509 tax ID	*
[Ref.: #66792]	Clostridium sporogenes strain FDAARGOS_1532	1509.218	complete	PATRIC	1509 tax ID	*
[Ref.: #66792]	Clostridium sporogenes strain FDAARGOS_1532	1509.227	complete	PATRIC	1509 tax ID	*

[Ref.: #889]	GC-content	27.0 mol%
[Ref.: #67770]	GC-content	27 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Clostridium botulinum strain NCTC13037 PATRIC: 1491.1062
[Ref.: #69481]	spore-forming	yes	93	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium sporogenes strain FDAARGOS_1532 strain Not applicable PATRIC: 1509.235
[Ref.: #69480]	motile	yes	84.461	no
[Ref.: #69480]	gram-positive	yes	90.88	no
[Ref.: #69480]	anaerobic	yes	97.413	yes
[Ref.: #69480]	aerobic	no	96.982	no
[Ref.: #69480]	halophile	no	78.898	no
[Ref.: #69480]	spore-forming	yes	93.349	no
[Ref.: #69480]	thermophile	no	97.11	yes
[Ref.: #69480]	glucose-util	yes	85.49	no
[Ref.: #69480]	flagellated	yes	51.416	no
[Ref.: #69480]	glucose-ferment	yes	64.072	no

Availability in culture collections External links

[Ref.: #889]

Culture collection no.

DSM 1734, ATCC 25784, NCIB 10677, Prevot 2318, VPI 4440-1, CCUG 15942, JCM 1410, BCRC 14514, CIP 60.54, NCIMB 10677, NCTC 13037, VPI 4440

[Ref.: #72241]

SI-ID 38669

References

#889	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1734

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37606 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72241

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38669.1 )

#122077 Collection of Institut Pasteur ; Curators of the CIP; CIP 60.54
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Clostridium putrificum in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Clostridium botulinum strain NCTC13037

Clostridium sporogenes strain FDAARGOS_1532 strain Not applicable

Change proposal

Change proposal