Name: Clostridium cochlearium 1243
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2572

Type strain:

Species: Clostridium cochlearium

Strain Designation: 1243, McClung, 1243, McClung, 10041

Culture col. no.: DSM 1285, ATCC 17787, JCM 1396, NCIMB 10633, CCUG 31665, BCRC 14471, CIP 104319, NCTC 13027

Strain history: CIP <- 1994, J.P. Carlier, Inst. Pasteur, Paris, France: strain 10041 <- ATCC <- L.S. McClung: strain 1243

NCBI tax ID(s): 1494 (species)

SI-ID 36726

ATCC 17787, CCUG 31665, NCIMB 10633, CIP 104319, NCIB 10633, JCM 1396, CCRC 14471, LMD 73.36, NCCB 73036, BCRC 14471, DSM 1285, KCTC 5185, NCTC 13027

Other strains from Clostridium cochlearium

C. cochlearium G7K4R3-PYG-96, DSM 29358
C. cochlearium H25alpha, DSM 666
C. cochlearium Zi7, DSM 667
C. cochlearium 998, DSM 2153, ATCC 17794, NCIMB ...
C. cochlearium 446, DSM 3588, ATCC 19407, NCTC ...
C. cochlearium CCUG 45978
C. cochlearium Med78_4-601-WT-1, DSM 107247

Section

Clostridium cochlearium 1243 is an anaerobe, spore-forming, mesophilic human pathogen that was isolated from Soil.

Gram-positive
spore-forming
anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium cochlearium**
	Full Scientific Name (LPSN)	Clostridium cochlearium (Douglas et al. 1919) Bergey et al. 1923 (Approved Lists 1980)

	Synonym	Clostridium lentoputrescens
	Synonym	"Bacillus* cochlearius"*

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #605]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #605]

Culture medium growth

[Ref.: #605]

Culture medium link

Medium recipe at MediaDive

[Ref.: #605]

Culture medium composition

expand / minimize

[Ref.: #37058]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #37058]

Culture medium growth

[Ref.: #37058]

Culture medium composition

expand / minimize

[Ref.: #118322]

Culture medium

CIP Medium 20

[Ref.: #118322]

Culture medium growth

[Ref.: #118322]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #605]	growth	37 °C
[Ref.: #37058]	growth	37 °C
[Ref.: #50678]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #605]	Temperature range	mesophilic
[Ref.: #37058]	Temperature range	mesophilic
[Ref.: #50678]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #605]	Oxygen tolerance	anaerobe
[Ref.: #50678]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.554

[Ref.: #69480]

Ability of spore formation

yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB538429 (>99% sequence identity) for Clostridium cochlearium from Microbeatlas

Aquatic Samples	733
Soil Samples	855
Animal Samples	1929
Plant Samples	204
Total Samples	3721

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #605]	Pathogenicity (human)	yes, in single cases
[Ref.: #605]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118322]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #605]	Clostridium cochlearium gene for 16S ribosomal RNA, partial sequence, strain: JCM 1396	AB538429	1474	ENA	1494 tax ID
[Ref.: #20218]	Clostridium cochlearium strain ATCC 17787 16S ribosomal RNA gene, partial sequence	M59093	1460	ENA	1494 tax ID	*
[Ref.: #20218]	Clostridium cochlearium strain ATCC 17787 16S ribosomal RNA gene, partial sequence	DQ911265	318	ENA	1494 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Clostridium cochlearium strain NCTC13027 genome assembly, chromosome: 1	LT906477		GenBank	1494 tax ID
[Ref.: #66792]	Clostridium cochlearium NCTC13027	GCA_900187165	complete	GenBank	1494 tax ID	*
[Ref.: #66792]	Clostridium cochlearium strain NCTC13027	1494.5	complete	PATRIC	1494 tax ID	*
[Ref.: #66792]	Clostridium cochlearium NCTC 13027	2773857856	complete	JGI IMG/M	1494 tax ID	*

[Ref.: #605]	GC-content	28.0 mol%
[Ref.: #67770]	GC-content	28 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Clostridium cochlearium NCTC13027 NCBI: GCA_900187165.1
[Ref.: #69481]	spore-forming	yes	88	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium cochlearium NCTC13027 NCBI: GCA_900187165.1
[Ref.: #69480]	motile	yes	77.508	no
[Ref.: #69480]	flagellated	no	58.695	no
[Ref.: #69480]	gram-positive	yes	65.839	no
[Ref.: #69480]	anaerobic	yes	99.577	yes
[Ref.: #69480]	aerobic	no	97.849	yes
[Ref.: #69480]	halophile	no	86.437	no
[Ref.: #69480]	spore-forming	yes	96.828	no
[Ref.: #69480]	thermophile	no	86.576	yes
[Ref.: #69480]	glucose-util	yes	81.992	no
[Ref.: #69480]	glucose-ferment	yes	59.992	no

Availability in culture collections External links

[Ref.: #605]

Culture collection no.

DSM 1285, ATCC 17787, JCM 1396, NCIMB 10633, CCUG 31665, BCRC 14471, CIP 104319, NCTC 13027

[Ref.: #72105]

SI-ID 36726

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Clostridium cochlearium Strain AGROS13, Isolated from a Sheep Dairy Farm in New Zealand.	Gupta TB, Maclean P, Jauregui R, Risson AN, Brightwell G	Microbiol Resour Announc	10.1128/MRA.00593-20	2020	*

References

#605	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1285

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37058 ; Curators of the CIP;
#50678 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 31665

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72105

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36726.1 )

#118322 Collection of Institut Pasteur ; Curators of the CIP; CIP 104319
* These data were automatically processed and therefore are not curated

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Clostridium cochlearium NCTC13027

Clostridium cochlearium NCTC13027

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