Clostridium cochlearium (DSM 2153, ATCC 17794, NCIMB 10629)

Name: Clostridium cochlearium (DSM 2153, ATCC 17794, NCIMB 10629)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2573

Type strain

Strain Designation 998

Culture col. no. DSM 2153 ATCC 17794 NCIMB 10629 998 NCTC 13028 2 more

NCBI tax ID(s) 1494

Special Collections DSMZ JCM

Links

Clostridium cochlearium 998 is an anaerobe, mesophilic prokaryote of the family Clostridiaceae.

anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 36733

ATCC 17794,DSM 2153,NCIB 10629,JCM 1384,CCRC 14549,NCIMB 10629,BCRC 14549,NCTC 13028

@ref 20215

Last LPSN update 2025-12-16 09:47:20

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium cochlearium

Full scientific name Clostridium cochlearium (Douglas et al. 1919) Bergey et al. 1923 (Approved Lists 1980)

Synonyms (2)

Clostridium lentoputrescens
"Bacillus cochlearius"

BacDive ID	Other strains from **Clostridium cochlearium** (8)	Type strain
2572	C. cochlearium 1243, McClung, 1243, McClung, 10041, DSM ... (type strain)
130920	C. cochlearium G7K4R3-PYG-96, DSM 29358
2570	C. cochlearium H25alpha, DSM 666
2571	C. cochlearium Zi7, DSM 667
2574	C. cochlearium 446, DSM 3588, ATCC 19407, NCTC 2909, CCUG ...
152177	C. cochlearium CCUG 45978
158910	C. cochlearium Med78_4-601-WT-1, DSM 107247
174395	C. cochlearium NLAE-zl-C224, DSM 116330

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
981	CHOPPED MEAT MEDIUM (DSMZ Medium 78)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
981	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
981	anaerobe
125439	anaerobe	99.3

Isolation, sampling and environmental information

Taxonmaps

69479

Global distribution of 16S sequence LC007105 (>99% sequence identity) for Clostridium cochlearium from Microbeatlas

Aquatic Samples	733
Soil Samples	855
Animal Samples	1929
Plant Samples	204
Total Samples	3721

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
981	yes, in single cases	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	53750_H02 assembly for Clostridium cochlearium NCTC13028	contig	GCA_900446995	1494.16	2808606730	1494	73.22

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Clostridium cochlearium gene for 16S ribosomal RNA, partial sequence, strain: JCM 1384	LC007105	1474		1494

GC content

@ref	GC-content (mol%)	Method
981	27.0
67770	27	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Clostridium cochlearium NCTC13028
NCBI: GCA_900446995

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	54.00	no
125439	motility	BacteriaNetⓘ	yes	70.80	no
125439	gram_stain	BacteriaNetⓘ	positive	81.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium cochlearium strain NCTC13028
PATRIC: 1494.16

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	61.43	no
125438	anaerobic	anaerobicⓘ	yes	89.12	no
125438	spore-forming	spore-formingⓘ	yes	76.68	no
125438	aerobic	aerobicⓘ	no	97.53	no
125438	thermophilic	thermophileⓘ	no	80.99	no
125438	flagellated	motile2+ⓘ	yes	76.69	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Purification and comparative studies of dihydrolipoamide dehydrogenases from the anaerobic, glycine-utilizing bacteria Peptostreptococcus glycinophilus, Clostridium cylindrosporum, and Clostridium sporogenes.	Dietrichs D, Andreesen JR.	J Bacteriol	10.1128/jb.172.1.243-251.1990	1990
	Dilution rates and their transition modes influence organic acid productivity and bacterial community structure on continuous meta-fermentation using complex microorganisms.	Koga T, Ishizu M, Watanabe K, Miyamoto H, Oshiro M, Sakai K, Tashiro Y.	J Biosci Bioeng	10.1016/j.jbiosc.2023.08.004	2023
	Characterization of metabolites and biomarkers for the probiotic effects of Clostridium cochlearium on high-fat diet-induced obese C57BL/6 mice.	Yang F, Zhu W, Edirisuriya P, Ai Q, Nie K, Ji X, Zhou K.	Eur J Nutr	10.1007/s00394-022-02840-z	2022
Phylogeny	Beneficial effects of a combination of Clostridium cochlearium and Lactobacillus acidophilus on body weight gain, insulin sensitivity, and gut microbiota in high-fat diet-induced obese mice.	Yang F, Zhu WJ, Edirisuriya P, Ai Q, Nie K, Ji XM, Li Y, Zhou K.	Nutrition	10.1016/j.nut.2021.111439	2022
	MALDI-TOF Mass Spectrometry and 16S rRNA Gene Sequence Analysis for the Identification of Foodborne Clostridium Spp.	Sulaiman IM, Miranda N, Simpson S.	J AOAC Int	10.1093/jaoacint/qsab070	2021
	Draft Genome Sequence of Clostridium cochlearium Strain AGROS13, Isolated from a Sheep Dairy Farm in New Zealand.	Gupta TB, Maclean P, Jauregui R, Risson AN, Brightwell G.	Microbiol Resour Announc	10.1128/mra.00593-20	2020
Pathogenicity	Salmonella Typhimurium expansion in the inflamed murine gut is dependent on aspartate derived from ROS-mediated microbiota lysis.	Yoo W, Shealy NG, Zieba JK, Torres TP, Baltagulov M, Thomas JD, Shelton CD, McGovern AG, Foegeding NJ, Olsan EE, Byndloss MX.	Cell Host Microbe	10.1016/j.chom.2024.05.001	2024
Metabolism	Identification of Clostridium cochlearium as an electroactive microorganism from the mouse gut microbiome.	Schwab L, Rago L, Koch C, Harnisch F.	Bioelectrochemistry	10.1016/j.bioelechem.2019.107334	2019
	Cultivating complexity: Advancements in establishing in vitro models for the mucus-adhering gut microbiota.	Calvigioni M, Mazzantini D, Celandroni F, Vozzi G, Ghelardi E.	Microb Biotechnol	10.1111/1751-7915.70036	2024
	Synergistic material-microbe interface toward deeper anaerobic defluorination.	Che S, Guan X, Rodrigues R, Yu Y, Xie Y, Liu C, Men Y.	Proc Natl Acad Sci U S A	10.1073/pnas.2400525121	2024
Metabolism	Isolation of acetic, propionic and butyric acid-forming bacteria from biogas plants.	Cibis KG, Gneipel A, Konig H.	J Biotechnol	10.1016/j.jbiotec.2016.01.008	2016
Genetics	Adaptation of Anaerobic Digestion Microbial Communities to High Ammonium Levels: Insights from Strain-Resolved Metagenomics.	Bucci L, Ghiotto G, Zampieri G, Raga R, Favaro L, Treu L, Campanaro S.	Environ Sci Technol	10.1021/acs.est.3c07737	2024
	Probiotic potential characterization and clustering using unsupervised algorithms of lactic acid bacteria from saltwater fish samples.	Mazlumi A, Panahi B, Hejazi MA, Nami Y.	Sci Rep	10.1038/s41598-022-16322-z	2022
Enzymology	Kinetic and structural characterization of carboxyspermidine dehydrogenase of polyamine biosynthesis.	Lee DF, Atencio N, Bouchey S, Shoemaker MR, Dodd JS, Satre M, Miller KA, McFarlane JS.	J Biol Chem	10.1016/j.jbc.2023.105033	2023
Metabolism	2'-FL and cross-feeding bifidobacteria reshaped the gut microbiota of infants with atopic dermatitis ex vivo and prevented dermatitis in mice post-microbiota transplantation through retinol metabolism activation.	Qi C, Li Z, Tu H, Sun F, Guo W, Di C, He R, Ze X, Zhang L, Gao R, Hu P, Yang W, Li K, Liu J, Pan X, Jin Z, Sun J.	Gut Microbes	10.1080/19490976.2025.2474148	2025
	Inactivation of guanylate kinase in Bacillus sp. TL7-3 cultivated under an optimized ratio of carbon and nitrogen sources influenced GTP regeneration capability and sporulation	Jaiaue P, Srimongkol P, Thitiprasert S, Piluk J, Thammaket J, Assabumrungrat S, Cheirsilp B, Tanasupawat S, Thongchul N.	Heliyon		2024
	Dual-mode sensor based on the synergy of magnetic separation and functionalized probes for the ultrasensitive detection of Clostridium perfringens.	Wang W, Yuan W, Wang D, Mai X, Wang D, Zhu Y, Liu F, Sun Z.	RSC Adv	10.1039/d2ra04344k	2022
	Lactobacillus plantarum Generate Electricity through Flavin Mononucleotide-Mediated Extracellular Electron Transfer to Upregulate Epithelial Type I Collagen Expression and Thereby Promote Microbial Adhesion to Intestine.	Ganzorig B, Zayabaatar E, Pham MT, Marito S, Huang CM, Lee YH.	Biomedicines	10.3390/biomedicines11030677	2023
Enzymology	Characterization of microbial community in the leachate associated with the decomposition of entombed pigs.	Yang SH, Hong SH, Cho SB, Lim JS, Bae SE, Ahn H, Lee EY.	J Microbiol Biotechnol	10.4014/jmb.1205.05006	2012
Metabolism	The fragmentation-recombination mechanism of the enzyme glutamate mutase studied by QM/MM simulations.	Rommel JB, Kastner J.	J Am Chem Soc	10.1021/ja202312d	2011
Proteome	Cysteine-Mediated Extracellular Electron Transfer of Lysinibacillus varians GY32.	Kong G, Yang Y, Luo Y, Liu F, Song D, Sun G, Li D, Guo J, Dong M, Xu M.	Microbiol Spectr	10.1128/spectrum.02798-22	2022
	Structure-Based Demystification of Radical Catalysis by a Coenzyme B₁₂ Dependent Enzyme-Crystallographic Study of Glutamate Mutase with Cofactor Homologues.	Gruber K, Csitkovits V, Lyskowski A, Kratky C, Krautler B.	Angew Chem Int Ed Engl	10.1002/anie.202208295	2022
	Structure-Based Demystification of Radical Catalysis by a Coenzyme B₁₂ Dependent Enzyme-Crystallographic Study of Glutamate Mutase with Cofactor Homologues.	Gruber K, Csitkovits V, Lyskowski A, Kratky C, Krautler B.	Angew Chem Weinheim Bergstr Ger	10.1002/ange.202208295	2022
Pathogenicity	Influence of long-chain polyphosphate and heat treatment on Clostridium cochlearium and Clostridium sporogenes isolated from processed cheese spread.	Borch E, Lycken L.	J Food Prot	10.4315/0362-028x-70.3.744	2007
Phylogeny	Intrinsic Class D beta-Lactamases of Clostridium difficile.	Toth M, Stewart NK, Smith C, Vakulenko SB.	mBio	10.1128/mbio.01803-18	2018
	Canine Mucosal Artificial Colon: development of a new colonic in vitro model adapted to dog sizes.	Deschamps C, Denis S, Humbert D, Priymenko N, Chalancon S, De Bodt J, Van de Wiele T, Ipharraguerre I, Alvarez-Acero I, Achard C, Apper E, Blanquet-Diot S.	Appl Microbiol Biotechnol	10.1007/s00253-023-12987-2	2024
Metabolism	Probiotics for the Treatment of Docetaxel-Related Weight Gain of Breast Cancer Patients-A Single-Center, Randomized, Double-Blind, and Placebo-Controlled Trial.	Juan Z, Qing Z, Yongping L, Qian L, Wu W, Wen Y, Tong J, Ding B.	Front Nutr	10.3389/fnut.2021.762929	2021
Phylogeny	Characterization of Clostridium spp. isolated from spoiled processed cheese products.	Lycken L, Borch E.	J Food Prot	10.4315/0362-028x-69.8.1887	2006
Enzymology	Searching for intermediates in the carbon skeleton rearrangement of 2-methyleneglutarate to (R)-3-methylitaconate catalyzed by coenzyme B12-dependent 2-methyleneglutarate mutase from Eubacterium barkeri.	Pierik AJ, Ciceri D, Lopez RF, Kroll F, Broker G, Beatrix B, Buckel W, Golding BT.	Biochemistry	10.1021/bi050049n	2005
Metabolism	Reactivation of latent HIV-1 by a wide variety of butyric acid-producing bacteria.	Imai K, Yamada K, Tamura M, Ochiai K, Okamoto T.	Cell Mol Life Sci	10.1007/s00018-012-0936-2	2012
	Structure and Function of sanV: a gene involved in nikkomycin biosynthesis of Streptomyces ansochromogenes.	Li W, Tan H.	Curr Microbiol	10.1007/s00284-002-3892-5	2003
Enzymology	Glutamate mutase from Clostridium cochlearium: the structure of a coenzyme B12-dependent enzyme provides new mechanistic insights.	Reitzer R, Gruber K, Jogl G, Wagner UG, Bothe H, Buckel W, Kratky C.	Structure	10.1016/s0969-2126(99)80116-6	1999
Enzymology	Characterization of Rosa canina Fruits Collected in Urban Areas of Slovakia. Genome Size, iPBS Profiles and Antioxidant and Antimicrobial Activities.	Rovna K, Ivanisova E, Ziarovska J, Ferus P, Terentjeva M, Kowalczewski PL, Kacaniova M.	Molecules	10.3390/molecules25081888	2020
Enzymology	Crystallization and preliminary X-ray analysis of recombinant glutamate mutase and of the isolated component S from Clostridium cochlearium.	Reitzer R, Krasser M, Jogl G, Buckel W, Bothe H, Kratky C.	Acta Crystallogr D Biol Crystallogr	10.1107/s0907444997020210	1998
Metabolism	Structure and dynamics of the B12-binding subunit of glutamate mutase from Clostridium cochlearium.	Hoffmann B, Konrat R, Bothe H, Buckel W, Krautler B.	Eur J Biochem	10.1046/j.1432-1327.1999.00482.x	1999
Enzymology	A protein pre-organized to trap the nucleotide moiety of coenzyme B(12): refined solution structure of the B(12)-binding subunit of glutamate mutase from Clostridium tetanomorphum.	Hoffmann B, Tollinger M, Konrat R, Huhta M, Marsh EN, Krautler B.	Chembiochem	10.1002/1439-7633(20010903)2:9<643::aid-cbic643>3.0.co;2-j	2001
Metabolism	Identification of the 4-glutamyl radical as an intermediate in the carbon skeleton rearrangement catalyzed by coenzyme B12-dependent glutamate mutase from Clostridium cochlearium.	Bothe H, Darley DJ, Albracht SP, Gerfen GJ, Golding BT, Buckel W.	Biochemistry	10.1021/bi971393q	1998
Metabolism	The crystal structures of CDD-1, the intrinsic class D beta-lactamase from the pathogenic Gram-positive bacterium Clostridioides difficile, and its complex with cefotaxime.	Stewart NK, Smith CA, Toth M, Stasyuk A, Vakulenko SB.	J Struct Biol	10.1016/j.jsb.2019.09.008	2019
Enzymology	Coordination of a histidine residue of the protein-component S to the cobalt atom in coenzyme B12-dependent glutamate mutase from Clostridium cochlearium.	Zelder O, Beatrix B, Kroll F, Buckel W.	FEBS Lett	10.1016/0014-5793(95)00762-x	1995
	Cloning, nucleotide sequencing, and expression of the 3-methylaspartate ammonia-lyase gene from Citrobacter amalonaticus strain YG-1002.	Kato Y, Asano Y.	Appl Microbiol Biotechnol	10.1007/s002530051322	1998
	Degradable Poly(3-hydroxybutyrate)-The Basis of Slow-Release Fungicide Formulations for Suppressing Potato Pathogens.	Volova TG, Kiselev EG, Baranovskiy SV, Zhila NO, Prudnikova SV, Shishatskaya EI, Kuzmin AP, Nemtsev IV, Vasiliev AD, Thomas S.	Polymers (Basel)	10.3390/polym14173669	2022
	Cloning, sequencing and expression in Escherichia coli of the gene encoding component S of the coenzyme B12-dependent glutamate mutase from Clostridium cochlearium.	Zelder O, Beatrix B, Buckel W.	FEMS Microbiol Lett	10.1111/j.1574-6968.1994.tb06797.x	1994
Enzymology	Characterization of the coenzyme-B12-dependent glutamate mutase from Clostridium cochlearium produced in Escherichia coli.	Zelder O, Beatrix B, Leutbecher U, Buckel W.	Eur J Biochem	10.1111/j.1432-1033.1994.tb20083.x	1994
	Degradation of 2-nitrodiphenylamine, a component of Otto Fuel II, by Clostridium spp.	Powell S, Franzmann PD, Cord-Ruwisch R, Toze S.	Anaerobe	10.1006/anae.1997.0141	1998
Enzymology	Glutamate mutase from Clostridium cochlearium. Purification, cobamide content and stereospecific inhibitors.	Leutbecher U, Bocher R, Linder D, Buckel W.	Eur J Biochem	10.1111/j.1432-1033.1992.tb16840.x	1992
Metabolism	Identification of a paramagnetic species as an early intermediate in the coenzyme B12-dependent glutamate mutase reaction. A cob(II)amide?	Leutbecher U, Albracht SP, Buckel W.	FEBS Lett	10.1016/0014-5793(92)80754-5	1992
Metabolism	Clostridium sticklandii, a specialist in amino acid degradation:revisiting its metabolism through its genome sequence.	Fonknechten N, Chaussonnerie S, Tricot S, Lajus A, Andreesen JR, Perchat N, Pelletier E, Gouyvenoux M, Barbe V, Salanoubat M, Le Paslier D, Weissenbach J, Cohen GN, Kreimeyer A.	BMC Genomics	10.1186/1471-2164-11-555	2010
Metabolism	An Amoebal Grazer of Cyanobacteria Requires Cobalamin Produced by Heterotrophic Bacteria.	Ma AT, Beld J, Brahamsha B.	Appl Environ Microbiol	10.1128/aem.00035-17	2017
Pathogenicity	Role of hydrogen sulfide in mercury resistance determined by plasmid of Clostridium cochlearium T-2.	Pan-Hou HS, Imura N.	Arch Microbiol	10.1007/bf00417179	1981
	Reproducible, high-yielding, biological caproate production from food waste using a single-phase anaerobic reactor system.	Nzeteu CO, Trego AC, Abram F, O'Flaherty V.	Biotechnol Biofuels	10.1186/s13068-018-1101-4	2018
Metabolism	Utilization of hydrogen and formate by Campylobacter spec. under aerobic and anaerobic conditions.	Laanbroek HJ, Stal LH, Veldkamp H.	Arch Microbiol	10.1007/bf00407935	1978
Metabolism	Competition for L-glutamate between specialised and versatile Clostridium species.	Laanbroek HJ, Smit AJ, Nulend GK, Veldkamp H.	Arch Microbiol	10.1007/bf00413275	1979
	Native corrinoids from Clostridium cochlearium are adeninylcobamides: spectroscopic analysis and identification of pseudovitamin B(12) and factor A.	Hoffmann B, Oberhuber M, Stupperich E, Bothe H, Buckel W, Konrat R, Krautler B.	J Bacteriol	10.1128/jb.182.17.4773-4782.2000	2000
Metabolism	Non-canonical active site architecture of the radical SAM thiamin pyrimidine synthase.	Fenwick MK, Mehta AP, Zhang Y, Abdelwahed SH, Begley TP, Ealick SE.	Nat Commun	10.1038/ncomms7480	2015
	Crystalline inclusions in Bacillus thuringiensis.	Norris JR, Proctor HM.	J Bacteriol	10.1128/jb.98.2.824-826.1969	1969
	Crystalline inclusions of Clostridium cochlearium.	Pope L, Yolton DP, Rode LJ.	J Bacteriol	10.1128/jb.96.5.1859-1862.1968	1968
Metabolism	Plasmid-controlled mercury biotransformation by Clostridium cochlearium T-2.	Pan-Hou HS, Hosono M, Imura N.	Appl Environ Microbiol	10.1128/aem.40.6.1007-1011.1980	1980
Metabolism	Crystallographic studies on B12 binding proteins in eukaryotes and prokaryotes.	Sukumar N.	Biochimie	10.1016/j.biochi.2013.01.014	2013
	Spore fine structure in Clostridium cochlearium.	Pope L, Rode LJ.	J Bacteriol	10.1128/jb.100.2.994-1001.1969	1969
Metabolism	A new paradigm for electrostatic catalysis of radical reactions in vitamin B12 enzymes.	Sharma PK, Chu ZT, Olsson MH, Warshel A.	Proc Natl Acad Sci U S A	10.1073/pnas.0702238104	2007
Metabolism	Metabolic engineering of cobalamin (vitamin B12) production in Bacillus megaterium.	Biedendieck R, Malten M, Barg H, Bunk B, Martens JH, Deery E, Leech H, Warren MJ, Jahn D.	Microb Biotechnol	10.1111/j.1751-7915.2009.00125.x	2010
Metabolism	Mercury methylation from unexpected sources: molybdate-inhibited freshwater sediments and an iron-reducing bacterium.	Fleming EJ, Mack EE, Green PG, Nelson DC.	Appl Environ Microbiol	10.1128/aem.72.1.457-464.2006	2006
Metabolism	Structures of the N-terminal modules imply large domain motions during catalysis by methionine synthase.	Evans JC, Huddler DP, Hilgers MT, Romanchuk G, Matthews RG, Ludwig ML.	Proc Natl Acad Sci U S A	10.1073/pnas.0308082100	2004
Phylogeny	Analysis of the unexplored features of rrs (16S rDNA) of the Genus Clostridium.	Kalia VC, Mukherjee T, Bhushan A, Joshi J, Shankar P, Huma N.	BMC Genomics	10.1186/1471-2164-12-18	2011
Phylogeny	Clostridium pascui sp. nov., a new glutamate-fermenting sporeformer from a pasture in Pakistan.	Wilde E, Collins MD, Hippe H.	Int J Syst Bacteriol	10.1099/00207713-47-1-164	1997

References

#981	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2153
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Clostridium cochlearium (DSM 2153, ATCC 17794, NCIMB 10629)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900446995

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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