Name: Clostridium cochlearium 998
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2573

Type strain:

Species: Clostridium cochlearium

Strain Designation: 998

Culture col. no.: DSM 2153, ATCC 17794, NCIMB 10629, JCM 1384, BCRC 14549, NCTC 13028

Strain history: ATCC 17794 <-- L. S. McClung 998 <-- S. E. Hartsell M-10.

NCBI tax ID(s): 1494 (species)

SI-ID 36733

ATCC 17794, DSM 2153, NCIB 10629, JCM 1384, CCRC 14549, NCIMB 10629, BCRC 14549, NCTC 13028

Other strains from Clostridium cochlearium

C. cochlearium 1243, McClung, 1243, McClung, 10041, ... (type strain)
C. cochlearium G7K4R3-PYG-96, DSM 29358
C. cochlearium H25alpha, DSM 666
C. cochlearium Zi7, DSM 667
C. cochlearium 446, DSM 3588, ATCC 19407, NCTC ...
C. cochlearium CCUG 45978
C. cochlearium Med78_4-601-WT-1, DSM 107247

Section

Clostridium cochlearium 998 is an anaerobe, spore-forming, mesophilic human pathogen of the family Clostridiaceae.

Gram-positive
spore-forming
anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium cochlearium**
	Full Scientific Name (LPSN)	Clostridium cochlearium (Douglas et al. 1919) Bergey et al. 1923 (Approved Lists 1980)

	Synonym	Clostridium lentoputrescens
	Synonym	"Bacillus* cochlearius"*

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #981]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #981]

Culture medium growth

[Ref.: #981]

Culture medium link

Medium recipe at MediaDive

[Ref.: #981]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #981]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #981]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #981]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.229

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence LC007105 (>99% sequence identity) for Clostridium cochlearium from Microbeatlas

Aquatic Samples	733
Soil Samples	855
Animal Samples	1929
Plant Samples	204
Total Samples	3721

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #981]	Pathogenicity (human)	yes, in single cases
[Ref.: #981]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Clostridium cochlearium gene for 16S ribosomal RNA, partial sequence, strain: JCM 1384	LC007105	1474	ENA	1494 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Clostridium cochlearium NCTC13028	GCA_900446995	contig	GenBank	1494 tax ID
[Ref.: #66792]	Clostridium cochlearium strain NCTC13028	1494.16	wgs	PATRIC	1494 tax ID	*
[Ref.: #66792]	Clostridium cochlearium NCTC 13028	2808606730	draft	JGI IMG/M	1494 tax ID	*

[Ref.: #981]	GC-content	27.0 mol%
[Ref.: #67770]	GC-content	27 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Clostridium cochlearium strain NCTC13028 PATRIC: 1494.16
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium cochlearium strain NCTC13028 PATRIC: 1494.16
[Ref.: #69480]	motile	yes	74.915	no
[Ref.: #69480]	gram-positive	yes	69.118	no
[Ref.: #69480]	anaerobic	yes	99.335	yes
[Ref.: #69480]	aerobic	no	96.506	no
[Ref.: #69480]	halophile	no	84.535	no
[Ref.: #69480]	spore-forming	yes	96.796	no
[Ref.: #69480]	thermophile	no	80.734	yes
[Ref.: #69480]	glucose-util	yes	85.1	no
[Ref.: #69480]	flagellated	no	61.328	no
[Ref.: #69480]	glucose-ferment	yes	62.083	no

Availability in culture collections External links

[Ref.: #981]

Culture collection no.

DSM 2153, ATCC 17794, NCIMB 10629, JCM 1384, BCRC 14549, NCTC 13028

[Ref.: #72106]

SI-ID 36733

References

#981	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2153

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72106

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36733.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Clostridium cochlearium in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Clostridium cochlearium strain NCTC13028

Clostridium cochlearium strain NCTC13028

Change proposal

Change proposal