Name: Gottschalkia acidurici 9a
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2537

Type strain:

Species: Gottschalkia acidurici

Strain Designation: 9a

Culture col. no.: DSM 604, ATCC 7906, IMG 1642, KCTC 5404

Strain history: <- Institut für Mikrobiologie, Universität Göttingen (IMG), Germany; IMG 1642 <- G. Gottschalk <- H. A. Barker and J. V. Beck, University of California, Berkeley, USA; 9a

NCBI tax ID(s): 1556 (species)

SI-ID 34890

ATCC 7906, DSM 604, NCIMB 10678, LMD 46.94, NCCB 46094, BCRC 14475, CCRC 14475, CIP 104303

Other strains from Gottschalkia acidurici

G. acidurici AC-1, DSM 10158
G. acidurici AC-3, DSM 10159
G. acidurici MJ-2, DSM 10161
G. acidurici AAM-2, DSM 10157
G. acidurici NOA-1, DSM 10163

Section

Gottschalkia acidurici 9a is an anaerobe, chemoorganotroph, spore-forming bacterium that was isolated from soil.

Gram-positive
motile
rod-shaped
spore-forming
anaerobe
chemoorganotroph
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Tissierellales*
	Family	*Gottschalkiaceae*
	Genus	*Gottschalkia*
	Species	**Gottschalkia acidurici**
	Full Scientific Name (LPSN)	Gottschalkia acidurici (Liebert 1909) Poehlein et al. 2017

	Synonym	"Bacillus* acidiurici"*
	Synonym	Clostridium acidiurici
	Synonym	"Gottschalkia* acidurici"*
	Synonym	Clostridium acidurici

Information on morphological and physiological properties Morphology

[Ref.: #43456]	Gram stain	positive

[Ref.: #43456]	Cell length	2.5-4 µm

[Ref.: #43456]	Cell width	0.5-0.7 µm

[Ref.: #43456]	Cell shape	rod-shaped

[Ref.: #43456]	Motility	yes

[Ref.: #43456]	Flagellum arrangement	polar

[Ref.: #43456]	Colony size	1-2 mm
[Ref.: #43456]	Colony color	whitish
[Ref.: #43456]	Cultivation medium used	Enrichment medium containing uric acid

Information on culture and growth conditions Culture and growth conditions

[Ref.: #316]

Culture medium

GOTTSCHALKIA MEDIUM (DSMZ Medium 76)

[Ref.: #316]

Culture medium growth

[Ref.: #316]

Culture medium link

Medium recipe at MediaDive

[Ref.: #316]

Culture medium composition

expand / minimize

[Ref.: #43456]

Culture medium

Enrichment medium containing uric acid

[Ref.: #43456]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #316]			growth	37 °C
[Ref.: #43456]			optimum	31-37 °C

[Ref.: #316]	Temperature range	mesophilic
[Ref.: #43456]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43456]			optimum	7.6-8.1

Information on physiology and metabolism Physiology and metabolism

[Ref.: #316]	Oxygen tolerance	anaerobe
[Ref.: #43456]	Oxygen tolerance	obligate anaerobe

[Ref.: #43456]

Nutrition type

chemoorganotroph

[Ref.: #43456]	Spore description	terminally located oval spores that cause a swelling of the cell
[Ref.: #43456]	Type of spore	spore
[Ref.: #43456]	Ability of spore formation	yes

[Ref.: #316]	Name of produced compound	(R) citrate synthase
[Ref.: #316]	Name of produced compound	xanthine dehydrogenase

[Ref.: #43456]

Observation

requires purines for growth

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43456]	adenine ChEBI	-	assimilation
[Ref.: #43456]	adenosine ChEBI	-	assimilation
[Ref.: #43456]	cellobiose ChEBI	-	assimilation
[Ref.: #43456]	D-fructose ChEBI	-	assimilation
[Ref.: #43456]	D-galactose ChEBI	-	assimilation
[Ref.: #43456]	D-glucose ChEBI	-	assimilation
[Ref.: #43456]	D-mannitol ChEBI	-	assimilation
[Ref.: #43456]	D-mannose ChEBI	-	assimilation
[Ref.: #43456]	D-ribose ChEBI	-	assimilation
[Ref.: #43456]	D-sorbitol ChEBI	-	assimilation
[Ref.: #43456]	D-xylose ChEBI	-	assimilation
[Ref.: #43456]	gelatin ChEBI	-	hydrolysis
[Ref.: #43456]	guanine ChEBI	+	assimilation
[Ref.: #43456]	hypoxanthine ChEBI	+	assimilation
[Ref.: #43456]	L-arabinose ChEBI	-	assimilation
[Ref.: #43456]	lactose ChEBI	-	assimilation
[Ref.: #43456]	maltose ChEBI	-	assimilation
[Ref.: #43456]	nitrate ChEBI	-	reduction
[Ref.: #43456]	starch ChEBI	-	hydrolysis
[Ref.: #43456]	sucrose ChEBI	-	assimilation
[Ref.: #43456]	sulfate ChEBI	-	reduction
[Ref.: #43456]	sulfite ChEBI	-	reduction
[Ref.: #43456]	thiosulfate ChEBI	-	reduction
[Ref.: #43456]	uric acid ChEBI	+	assimilation
[Ref.: #43456]	xanthine ChEBI	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43456]	acetate ChEBI	yes
[Ref.: #43456]	ammonia ChEBI	yes
[Ref.: #43456]	butyrate ChEBI	no
[Ref.: #43456]	carbon dioxide ChEBI	yes
[Ref.: #43456]	dihydrogen ChEBI	no
[Ref.: #43456]	formate ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #43456]	catalase	-	1.11.1.6
[Ref.: #43456]	lecithinase	-
[Ref.: #43456]	lipase	-
[Ref.: #43456]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #316]	Sample type/isolated from	soil
[Ref.: #316]	Geographic location (country and/or sea, region)	California
[Ref.: #316]	Country	USA
[Ref.: #316]	Country ISO 3 Code	USA
[Ref.: #316]	Continent	North America

[Ref.: #43456]	Sample type/isolated from	Garden soil in California
[Ref.: #43456]	Geographic location (country and/or sea, region)	California
[Ref.: #43456]	Country	USA
[Ref.: #43456]	Country ISO 3 Code	USA
[Ref.: #43456]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Garden
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HE582772 (>99% sequence identity) for Gottschalkia acidurici subclade from Microbeatlas

Aquatic Samples	996
Soil Samples	1881
Animal Samples	3560
Plant Samples	316
Total Samples	6753

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #316]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #316]	Clostridium acidurici partial 16S rRNA gene, type strain DSM 604T	HE582772	1513	ENA	1556 tax ID
[Ref.: #20218]	Clostridium acidiurici 16S ribosomal RNA	M59084	1527	ENA	1556 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Gottschalkia acidurici 9a	GCA_000299355	complete	GenBank	1128398 tax ID	*
[Ref.: #66792]	Gottschalkia acidurici 9a	1128398.8	plasmid	PATRIC	1128398 tax ID	*
[Ref.: #66792]	Gottschalkia acidurici 9a	2517487003	complete	JGI IMG/M	1128398 tax ID	*

[Ref.: #316]	GC-content	27.8 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #43456]	GC-content	29.9 mol%
[Ref.: #316]	GC-content	29.9 mol%	sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gottschalkia acidurici 9a 9a NCBI: GCA_000299355.1
[Ref.: #69480]	motile	yes	81.595	no
[Ref.: #69480]	flagellated	no	57.613	no
[Ref.: #69480]	gram-positive	yes	85.476	yes
[Ref.: #69480]	anaerobic	yes	98.206	yes
[Ref.: #69480]	aerobic	no	96.48	yes
[Ref.: #69480]	halophile	no	91.218	no
[Ref.: #69480]	spore-forming	yes	91.613	no
[Ref.: #69480]	glucose-util	yes	53.84	yes
[Ref.: #69480]	thermophile	no	95.858	yes
[Ref.: #69480]	glucose-ferment	yes	50.503	no

Availability in culture collections External links

[Ref.: #316]

Culture collection no.

DSM 604, ATCC 7906, IMG 1642, KCTC 5404

[Ref.: #72071]

SI-ID 34890

References

#316	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 604

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#43456

Anja Poehlein, Natalya Yutin, Rolf Daniel, Michael Y. Galperin: Proposal for the reclassification of obligately purine-fermenting bacteria Clostridium acidurici (Barker 1938) and Clostridium purinilyticum (Dürre et al. 1981) as Gottschalkia acidurici gen. nov. comb. nov. and Gottschalkia purinilytica comb. nov. and of Eubacterium angustum (Beuscher and Andreesen 1985) as Andreesenia angusta gen. nov. comb. nov. in the family Gottschalkiaceae fam. nov.. IJSEM 67: 2711 - 2719 2017 ( DOI 10.1099/ijsem.0.002008 , PubMed 28853681 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#72071

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID34890.1 )

* These data were automatically processed and therefore are not curated

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Gottschalkia acidurici 9a 9a

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