Name: Arsukibacterium ikkense GCM72
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24825

Type strain:

Species: Arsukibacterium ikkense

Strain Designation: GCM72

Culture col. no.: DSM 17999, LMG 23455

Strain history: <- P. Stougaard, Royal Vet. and Agricultural Univ., Frederiksberg, Denmark; GCM 72

NCBI tax ID(s): 336831 (species)

SI-ID 399751

DSM 17999

Section

Arsukibacterium ikkense GCM72 is a bacterium that was isolated from alkaline, low-saline ikaite tufa columns.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	[Gammaproteobacteria, not assigned to order]
	Family	[Gammaproteobacteria, not assigned to family]
	Genus	*Arsukibacterium*
	Species	**Arsukibacterium ikkense**
	Full Scientific Name (LPSN)	Arsukibacterium ikkense Schmidt et al. 2016

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18785]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #18785]

Culture medium growth

[Ref.: #18785]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18785]

Culture medium composition

expand / minimize

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18785]	Sample type/isolated from	alkaline, low-saline ikaite tufa columns
[Ref.: #18785]	Geographic location (country and/or sea, region)	Ikka Fjord (61°11' N, 48°01' W)
[Ref.: #18785]	Country	Greenland
[Ref.: #18785]	Country ISO 3 Code	GRL
[Ref.: #18785]	Continent	North America
[Ref.: #18785]	Geographic location	61.1833°/-48.0167°
* marker position based on {}

Isolation sources categories

#Condition

#Alkaline

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ112664 (>99% sequence identity) for Chromatiaceae from Microbeatlas

Aquatic Samples	431
Soil Samples	25
Animal Samples	427
Plant Samples	14
Total Samples	897

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18785]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18785]	Arsukibacterium ikkense strain GCM72 16S ribosomal RNA gene, partial sequence	DQ112664	1479	ENA	336831 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Arsukibacterium ikkense GCM72	GCA_000987775	contig	GenBank	336831 tax ID	*
[Ref.: #66792]	Arsukibacterium ikkense GCM72	2711768198	draft	JGI IMG/M	336831 tax ID	*

[Ref.: #18785]

GC-content

49.9 mol%

Availability in culture collections External links

[Ref.: #18785]

Culture collection no.

DSM 17999, LMG 23455

[Ref.: #88643]

SI-ID 399751

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rheinheimera salexigens sp. nov., isolated from a fishing hook, and emended description of the genus Rheinheimera.	Hayashi K, Busse HJ, Golke J, Anderson J, Wan X, Hou S, Chain PSG, Prescott RD, Donachie SP	Int J Syst Evol Microbiol	10.1099/ijsem.0.002412	2017	*
Phylogeny	Arsukibacterium ikkense gen. nov., sp. nov, a novel alkaliphilic, enzyme-producing gamma-Proteobacterium isolated from a cold and alkaline environment in Greenland.	Schmidt M, Prieme A, Stougaard P	Syst Appl Microbiol	10.1016/j.syapm.2006.05.003	2006	*
Genetics	Draft genome sequences of two protease-producing strains of arsukibacterium, isolated from two cold and alkaline environments.	Lylloff JE, Hansen LB, Jepsen M, Hallin PF, Sorensen SJ, Stougaard P, Glaring MA	Genome Announc	10.1128/genomeA.00585-15	2015	*

References

#18785

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17999

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88643

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399751.1 )

* These data were automatically processed and therefore are not curated

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