Name: Algoriphagus zhangzhouensis 12C11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24720

Type strain:

Species: Algoriphagus zhangzhouensis

Strain Designation: 12C11

Culture col. no.: DSM 25035, CGMCC 1.11027, MCCC 1F01099

Strain history: <- Y. Caiyun, Xiamen Univ., China; 12C11 <- C. Yang

NCBI tax ID(s): 1073327 (species)

SI-ID 401691

DSM 25035

Section

Algoriphagus zhangzhouensis 12C11 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sediment from mangrove area.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Cyclobacteriaceae*
	Genus	*Algoriphagus*
	Species	**Algoriphagus zhangzhouensis**
	Full Scientific Name (LPSN)	Algoriphagus zhangzhouensis Yang et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30782]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #30782]	Cell length	1.7 µm

[Ref.: #30782]	Cell width	0.65 µm

[Ref.: #30782]	Cell shape	rod-shaped

[Ref.: #30782]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91.092

[Ref.: #20275]

Incubation period

1-2 days

[Ref.: #30782]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20275]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #20275]

Culture medium growth

[Ref.: #20275]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20275]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20275]	growth	28 °C
[Ref.: #30782]	growth	04-40 °C
[Ref.: #30782]	optimum	25 °C

[Ref.: #20275]	Temperature range	mesophilic
[Ref.: #30782]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30782]			optimum	7.5
[Ref.: #30782]			growth	5.5-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30782]

Oxygen tolerance

aerobe

[Ref.: #30782]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.983

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30782]		NaCl		growth	0-10	%
[Ref.: #30782]		NaCl		optimum	4	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30782]	arabinose ChEBI	+	carbon source
[Ref.: #30782]	cellobiose ChEBI	+	carbon source
[Ref.: #30782]	citrate ChEBI	+	carbon source
[Ref.: #30782]	fucose ChEBI	+	carbon source
[Ref.: #30782]	galactose ChEBI	+	carbon source
[Ref.: #30782]	glucose ChEBI	+	carbon source
[Ref.: #30782]	lactose ChEBI	+	carbon source
[Ref.: #30782]	maltose ChEBI	+	carbon source
[Ref.: #30782]	mannose ChEBI	+	carbon source
[Ref.: #30782]	melibiose ChEBI	+	carbon source
[Ref.: #30782]	raffinose ChEBI	+	carbon source
[Ref.: #30782]	rhamnose ChEBI	+	carbon source
[Ref.: #30782]	salicin ChEBI	+	carbon source
[Ref.: #30782]	sucrose ChEBI	+	carbon source
[Ref.: #30782]	trehalose ChEBI	+	carbon source
[Ref.: #30782]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30782]	acid phosphatase	+	3.1.3.2
[Ref.: #30782]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30782]	catalase	+	1.11.1.6
[Ref.: #30782]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30782]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20275]	Sample type/isolated from	sediment from mangrove area
[Ref.: #20275]	Geographic location (country and/or sea, region)	Fujian province, Zhangzhou, Fugong Mangrove Nature Reservation Area (117°54’E, 24°23’N)
[Ref.: #20275]	Country	China
[Ref.: #20275]	Country ISO 3 Code	CHN
[Ref.: #20275]	Continent	Asia
[Ref.: #20275]	Geographic location	24.3833°/117.9000°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Mangrove
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN426847 (>99% sequence identity) for Algoriphagus zhangzhouensis from Microbeatlas

Aquatic Samples	850
Soil Samples	243
Animal Samples	378
Plant Samples	27
Total Samples	1498

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20275]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20275]	Algoriphagus zhangzhouensis strain 12C11 16S ribosomal RNA gene, partial sequence	JN426847	1445	ENA	1073327 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Algoriphagus zhangzhouensis CGMCC 1.11027	GCA_004366575	scaffold	GenBank	1073327 tax ID	*
[Ref.: #66792]	Algoriphagus zhangzhouensis DSM 25035	GCA_900148515	scaffold	GenBank	1073327 tax ID	*
[Ref.: #66792]	Algoriphagus zhangzhouensis strain CGMCC 1.11027	1073327.6	wgs	PATRIC	1073327 tax ID	*
[Ref.: #66792]	Algoriphagus zhangzhouensis strain DSM 25035	1073327.4	wgs	PATRIC	1073327 tax ID	*
[Ref.: #66792]	Algoriphagus zhangzhouensis DSM 25035	2617270825	draft	JGI IMG/M	1073327 tax ID	*
[Ref.: #66792]	Algoriphagus zhangzhouensis CGMCC 1.11027	2667528185	draft	JGI IMG/M	1073327 tax ID	*

[Ref.: #20275]	GC-content	38.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30782]	GC-content	38.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Algoriphagus zhangzhouensis CGMCC 1.11027 NCBI: GCA_004366575.1
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Algoriphagus zhangzhouensis CGMCC 1.11027 NCBI: GCA_004366575.1
[Ref.: #69480]	motile	no	93.035	yes
[Ref.: #69480]	flagellated	no	97.501	yes
[Ref.: #69480]	gram-positive	no	97.892	yes
[Ref.: #69480]	anaerobic	no	98.782	yes
[Ref.: #69480]	aerobic	yes	89.074	no
[Ref.: #69480]	halophile	no	77.451	no
[Ref.: #69480]	spore-forming	no	96.075	yes
[Ref.: #69480]	glucose-util	yes	89.862	yes
[Ref.: #69480]	thermophile	no	97.565	yes
[Ref.: #69480]	glucose-ferment	no	89.015	no

Availability in culture collections External links

[Ref.: #20275]

Culture collection no.

DSM 25035, CGMCC 1.11027, MCCC 1F01099

[Ref.: #88550]

SI-ID 401691

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algoriphagus algorifonticola sp. nov., a marine bacterium isolated from cold spring area of South China Sea.	Yan C, Chen C, Chai B, Ye Y, Anwar N, Zhao Z, Wang R, Huo Y, Zhang X, Wu M, Zheng D	Int J Syst Evol Microbiol	10.1099/ijsem.0.005365	2022	*
Phylogeny	Algoriphagus kandeliae sp. nov., isolated from mangrove rhizosphere soil.	Song ZM, Wang KL, Yin Q, Chen CC, Xu Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003954	2020	*
Phylogeny	Algoriphagus zhangzhouensis sp. nov., isolated from mangrove sediment.	Yang C, Li Y, Guo Q, Lai Q, Zheng T, Tian Y	Int J Syst Evol Microbiol	10.1099/ijs.0.044271-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20275

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25035

#30782

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27113 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88550

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401691.1 )

#27113

IJSEM 1621 2013 ( DOI 10.1099/ijs.0.044271-0 , PubMed 22904223 )

* These data were automatically processed and therefore are not curated

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Algoriphagus zhangzhouensis CGMCC 1.11027

Algoriphagus zhangzhouensis CGMCC 1.11027

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