Saccharospirillum salsuginis (DSM 19800, KCTC 22169, CCTCC AA 207033)

Name: Saccharospirillum salsuginis (DSM 19800, KCTC 22169, CCTCC AA 207033)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24542

Type strain

Strain Designation YIM-Y25

Variant Isotype of BacDive ID 131172

Culture col. no. DSM 19800 KCTC 22169 CCTCC AA 207033 YIM-Y25 UCCCB26

NCBI tax ID(s) 418750

Special Collections DSMZ KCTC Literature strains UCCCB

History <- S.-K. Tang, YIM; YIM-Y25 Cui X., YIM; YIM-y25 < Li H.-M., Cui X.L. and Chen G. College of Bio-resources and Environmental Science/ Yunnan University

Links

Saccharospirillum salsuginis YIM-Y25 is an aerobe, Gram-negative, motile bacterium that was isolated from Yipinglang salt mine.

Gram-negative motile spiral-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 401933

DSM 19800

@ref 20215

Last LPSN update 2026-02-09 11:24:00

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Saccharospirillaceae

Genus Saccharospirillum

Species Saccharospirillum salsuginis

Full scientific name Saccharospirillum salsuginis Chen et al. 2009

BacDive ID	Other strains from **Saccharospirillum salsuginis** (1)	Type strain
131172	S. salsuginis YIM-Y25, CGMCC, DSM 17054

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
29006	negative	5.5 µm	0.6 µm	spiral-shaped
125438	negative					96.328

Pigmentation

29006

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20799	MEDIUM 514 PLUS ADDITIONAL SALT (DSMZ Medium 514b)		Medium recipe at MediaDive	Name: MEDIUM 514 plus additional salt (DSMZ Medium 514b; with strain-specific modifications) Composition: NaCl 80.0 g/l Agar 17.5 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
20799	positive	growth	28
29006	positive	growth	15-50
29006	positive	optimum	37
67772	positive	minimum	15
67772	positive	optimum	37
67772	positive	maximum	50

Culture pH

@ref	Ability	Type	PH	PH range
67772	positive	maximum	10.0
67772	positive	minimum	6.0
29006	positive	optimum	8
67772	positive	optimum	8.0
29006	positive	growth	6.0-10.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

29006

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
29006
125439		97.7
125438		93.011

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29006	NaCl	positive	growth	01-15 %
29006	NaCl	positive	optimum	5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29006	30089 ChEBI	acetate	+	carbon source
29006	16449 ChEBI	alanine	+	carbon source
29006	22599 ChEBI	arabinose	+	carbon source
29006	22653 ChEBI	asparagine	+	carbon source
29006	17057 ChEBI	cellobiose	+	carbon source
29006	16296 ChEBI	D-tryptophan	+	carbon source
29006	4853 ChEBI	esculin	+	hydrolysis
29006	28757 ChEBI	fructose	+	carbon source
29006	28260 ChEBI	galactose	+	carbon source
29006	17234 ChEBI	glucose	+	carbon source
29006	17716 ChEBI	lactose	+	carbon source
29006	25115 ChEBI	malate	+	carbon source
29006	17306 ChEBI	maltose	+	carbon source
29006	29864 ChEBI	mannitol	+	carbon source
29006	37684 ChEBI	mannose	+	carbon source
29006	17268 ChEBI	myo-inositol	+	carbon source
29006	17632 ChEBI	nitrate	+	reduction
29006	28044 ChEBI	phenylalanine	+	carbon source
29006	26271 ChEBI	proline	+	carbon source
29006	15361 ChEBI	pyruvate	+	carbon source
29006	16634 ChEBI	raffinose	+	carbon source
29006	26546 ChEBI	rhamnose	+	carbon source
29006	33942 ChEBI	ribose	+	carbon source
29006	30911 ChEBI	sorbitol	+	carbon source
29006	17992 ChEBI	sucrose	+	carbon source
29006	27082 ChEBI	trehalose	+	carbon source
29006	53426 ChEBI	tween 80	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
29006	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
29006	35581 ChEBI	indole	+

Enzymes

@ref	Value	Activity	Ec
29006	acid phosphatase	+	3.1.3.2
29006	alkaline phosphatase	+	3.1.3.1
29006	catalase	+	1.11.1.6
29006	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Other	#Mine
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
20799	Yipinglang salt mine	Yunnan	China	CHN	Asia
67772	Subterranean brine sample from the Yipinglang salt mine	Yunnan	China	CHN	Asia	25.3	101.9 25.3/101.9

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20799	1	Risk group (German classification)
67772	1

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1465185v1 assembly for Saccharospirillum salsuginis KCTC 22169	scaffold	GCA_014651855	418750.3	2994908901	418750	69.04

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20799	Saccharospirillum salsuginis strain YIM-Y25 16S ribosomal RNA gene, partial sequence	EF177670	1416		418750
124043	Saccharospirillum salsuginis strain KCTC 22169 16S ribosomal RNA gene, partial sequence.	MT759929	1379		418750

GC content

29006

GC-content (mol%)58.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Saccharospirillum salsuginis KCTC 22169
NCBI: GCA_014651855

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.70	no
125439	motility	BacteriaNetⓘ	yes	60.00	no
125439	gram_stain	BacteriaNetⓘ	negative	83.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	73.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Saccharospirillum salsuginis KCTC 22169
NCBI: GCA_014651855.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.33	yes
125438	anaerobic	anaerobicⓘ	no	91.86	yes
125438	aerobic	aerobicⓘ	yes	80.81	yes
125438	spore-forming	spore-formingⓘ	no	93.01	yes
125438	thermophilic	thermophileⓘ	no	97.66	no
125438	flagellated	motile2+ⓘ	yes	87.57	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharospirillum alexandrii sp. nov., isolated from the toxigenic marine dinoflagellate Alexandrium catenella LZT09.	Yang Q, Jiang Z, Zhou X, Xie Z, Wang Y, Wang D, Feng L, Yang G, Ge Y, Zhang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003832	2020
Phylogeny	Saccharospirillum mangrovi sp. nov., a bacterium isolated from mangrove sediment.	Zhang W, Yuan Y, Su D, Ding L, Yan X, Wu M, Epstein SS, He S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002899	2018
Phylogeny	Saccharospirillum correiae sp. nov., an endophytic bacterium isolated from the halophyte Halimione portulacoides.	Fidalgo C, Rocha J, Proenca DN, Morais PV, Alves A, Henriques I	Int J Syst Evol Microbiol	10.1099/ijsem.0.001914	2017
Phylogeny	Saccharospirillum aestuarii sp. nov., isolated from tidal flat sediment, and an emended description of the genus Saccharospirillum.	Choi A, Oh HM, Cho JC	Int J Syst Evol Microbiol	10.1099/ijs.0.022996-0	2010
Phylogeny	Saccharospirillum salsuginis sp. nov., a gammaproteobacterium from a subterranean brine.	Chen YG, Cui XL, Li QY, Wang YX, Tang SK, Liu ZX, Wen ML, Peng Q, Xu LH	Int J Syst Evol Microbiol	10.1099/ijs.0.003616-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20799	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19800
#25439	IJSEM 1382 2009 ( DOI 10.1099/ijs.0.003616-0 , PubMed 19502320 )
#29006	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25439
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67772	The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Saccharospirillum salsuginis (DSM 19800, KCTC 22169, CCTCC AA 207033)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014651855

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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