Name: Saccharospirillum salsuginis YIM-Y25
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24542

Type strain:

Species: Saccharospirillum salsuginis

Strain Designation: YIM-Y25

Variant: Isotype of BacDive ID 131172

Culture col. no.: DSM 19800, KCTC 22169, CCTCC AA 207033, UCCCB26

Strain history: Cui X., YIM; YIM-y25 < Li H.-M., Cui X.L. and Chen G. College of Bio-resources and Environmental Science/ Yunnan University

NCBI tax ID(s): 418750 (species)

SI-ID 401933

DSM 19800

Special Collections

Other strains from Saccharospirillum salsuginis

Section

Saccharospirillum salsuginis YIM-Y25 is an aerobe, Gram-negative, motile bacterium that was isolated from Yipinglang salt mine.

Gram-negative
motile
spiral-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Saccharospirillaceae*
	Genus	*Saccharospirillum*
	Species	**Saccharospirillum salsuginis**
	Full Scientific Name (LPSN)	Saccharospirillum salsuginis Chen et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29006]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %96.328

[Ref.: #29006]	Cell length	5.5 µm

[Ref.: #29006]	Cell width	0.6 µm

[Ref.: #29006]	Cell shape	spiral-shaped

[Ref.: #29006]	Motility	yes

[Ref.: #29006]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20799]

Culture medium

MEDIUM 514 PLUS ADDITIONAL SALT (DSMZ Medium 514b)

[Ref.: #20799]

Culture medium growth

[Ref.: #20799]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20799]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20799]	growth	28 °C
[Ref.: #29006]	growth	15-50 °C
[Ref.: #29006]	optimum	37 °C
[Ref.: #67772]	minimum	15 °C
[Ref.: #67772]	optimum	37 °C
[Ref.: #67772]	maximum	50 °C

		pH
[Ref.: #67772]	maximum	10.0
[Ref.: #67772]	minimum	6.0
[Ref.: #29006]	optimum	8
[Ref.: #67772]	optimum	8.0
[Ref.: #29006]	growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29006]

Oxygen tolerance

aerobe

[Ref.: #29006]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %93.011
[Ref.: #69481]	Ability of spore formation	no Confidence in %99

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29006]		NaCl		growth	01-15	%
[Ref.: #29006]		NaCl		optimum	5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29006]	acetate ChEBI	+	carbon source
[Ref.: #29006]	alanine ChEBI	+	carbon source
[Ref.: #29006]	arabinose ChEBI	+	carbon source
[Ref.: #29006]	asparagine ChEBI	+	carbon source
[Ref.: #29006]	cellobiose ChEBI	+	carbon source
[Ref.: #29006]	D-tryptophan ChEBI	+	carbon source
[Ref.: #29006]	esculin ChEBI	+	hydrolysis
[Ref.: #29006]	fructose ChEBI	+	carbon source
[Ref.: #29006]	galactose ChEBI	+	carbon source
[Ref.: #29006]	glucose ChEBI	+	carbon source
[Ref.: #29006]	lactose ChEBI	+	carbon source
[Ref.: #29006]	malate ChEBI	+	carbon source
[Ref.: #29006]	maltose ChEBI	+	carbon source
[Ref.: #29006]	mannitol ChEBI	+	carbon source
[Ref.: #29006]	mannose ChEBI	+	carbon source
[Ref.: #29006]	myo-inositol ChEBI	+	carbon source
[Ref.: #29006]	nitrate ChEBI	+	reduction
[Ref.: #29006]	phenylalanine ChEBI	+	carbon source
[Ref.: #29006]	proline ChEBI	+	carbon source
[Ref.: #29006]	pyruvate ChEBI	+	carbon source
[Ref.: #29006]	raffinose ChEBI	+	carbon source
[Ref.: #29006]	rhamnose ChEBI	+	carbon source
[Ref.: #29006]	ribose ChEBI	+	carbon source
[Ref.: #29006]	sorbitol ChEBI	+	carbon source
[Ref.: #29006]	sucrose ChEBI	+	carbon source
[Ref.: #29006]	trehalose ChEBI	+	carbon source
[Ref.: #29006]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #29006]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #29006]		indole ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #29006]	acid phosphatase	+	3.1.3.2
[Ref.: #29006]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29006]	catalase	+	1.11.1.6
[Ref.: #29006]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20799]	Sample type/isolated from	Yipinglang salt mine
[Ref.: #20799]	Geographic location (country and/or sea, region)	Yunnan
[Ref.: #20799]	Country	China
[Ref.: #20799]	Country ISO 3 Code	CHN
[Ref.: #20799]	Continent	Asia

[Ref.: #67772]	Sample type/isolated from	Subterranean brine sample from the Yipinglang salt mine
[Ref.: #67772]	Geographic location (country and/or sea, region)	Yunnan
[Ref.: #67772]	Country	China
[Ref.: #67772]	Country ISO 3 Code	CHN
[Ref.: #67772]	Continent	Asia
[Ref.: #67772]	Geographic location	25.3000°/101.9000°
* marker position based on {}

Isolation sources categories

#Engineered	#Other	#Mine
#Condition	#Saline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20799]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #67772]	Biosafety level	1

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20799]	Saccharospirillum salsuginis strain YIM-Y25 16S ribosomal RNA gene, partial sequence	EF177670	1416	GenBank ENA	418750 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Saccharospirillum salsuginis KCTC 22169	GCA_014651855	scaffold	GenBank ENA	418750 tax ID	*
[Ref.: #66792]	Saccharospirillum salsuginis strain KCTC 22169	418750.3	wgs	PATRIC	418750 tax ID	*

[Ref.: #29006]

GC-content

58.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Saccharospirillum salsuginis KCTC 22169 NCBI: GCA_014651855.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Saccharospirillum salsuginis KCTC 22169 NCBI: GCA_014651855.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.328	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	91.856	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	80.805	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	93.011	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.659	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	87.565	no

Availability in culture collections External links

[Ref.: #20799]

Culture collection no.

DSM 19800, KCTC 22169, CCTCC AA 207033, UCCCB26

[Ref.: #88397]

SI-ID 401933

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharospirillum alexandrii sp. nov., isolated from the toxigenic marine dinoflagellate Alexandrium catenella LZT09.	Yang Q, Jiang Z, Zhou X, Xie Z, Wang Y, Wang D, Feng L, Yang G, Ge Y, Zhang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003832	2020	*
Phylogeny	Saccharospirillum mangrovi sp. nov., a bacterium isolated from mangrove sediment.	Zhang W, Yuan Y, Su D, Ding L, Yan X, Wu M, Epstein SS, He S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002899	2018	*
Phylogeny	Saccharospirillum correiae sp. nov., an endophytic bacterium isolated from the halophyte Halimione portulacoides.	Fidalgo C, Rocha J, Proenca DN, Morais PV, Alves A, Henriques I	Int J Syst Evol Microbiol	10.1099/ijsem.0.001914	2017	*
Phylogeny	Saccharospirillum aestuarii sp. nov., isolated from tidal flat sediment, and an emended description of the genus Saccharospirillum.	Choi A, Oh HM, Cho JC	Int J Syst Evol Microbiol	10.1099/ijs.0.022996-0	2010	*
Phylogeny	Saccharospirillum salsuginis sp. nov., a gammaproteobacterium from a subterranean brine.	Chen YG, Cui XL, Li QY, Wang YX, Tang SK, Liu ZX, Wen ML, Peng Q, Xu LH	Int J Syst Evol Microbiol	10.1099/ijs.0.003616-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20799

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19800

#29006

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25439 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67772 The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88397

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401933.1 )

#25439

IJSEM 1382 2009 ( DOI 10.1099/ijs.0.003616-0 , PubMed 19502320 )

* These data were automatically processed and therefore are not curated

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Saccharospirillum salsuginis KCTC 22169

Saccharospirillum salsuginis KCTC 22169

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