Name: Prevotella jejuni CD3:28
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24343

Type strain:

Species: Prevotella jejuni

Strain Designation: CD3:28, CD3_28, CD3 : 28

Culture col. no.: DSM 26989, CCUG 60371, KCTC 15415

Strain history: <- DSM <- M Hedberg, Div. of Immunology, Institution of Clinical Microbiology, Umea Univ., Sweden

NCBI tax ID(s): 1177574 (species)

SI-ID 402495

DSM 26989, CCUG 60371

Special Collections

Other strains from Prevotella jejuni

Section

Prevotella jejuni CD3:28 is an anaerobe, Gram-negative, rod-shaped bacterium that was isolated from biopsy from small intestine of child with coeliac disease.

Gram-negative
rod-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Prevotellaceae*
	Genus	*Prevotella*
	Species	**Prevotella jejuni**
	Full Scientific Name (LPSN)	Prevotella jejuni Hedberg et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31117]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %95.234

[Ref.: #31117]	Cell length	1.4 µm

[Ref.: #31117]	Cell width	0.7 µm

[Ref.: #31117]	Cell shape	rod-shaped

[Ref.: #31117]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #20743]	Type of hemolysis	alpha/beta
[Ref.: #20743]	Hemolysis ability	1
[Ref.: #20743]	Incubation period	2-3 days

[Ref.: #62295]	Incubation period	1 day

[Ref.: #31117]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20743]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #20743]

Culture medium growth

[Ref.: #20743]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20743]

Culture medium composition

expand / minimize

[Ref.: #20743]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #20743]

Culture medium growth

[Ref.: #20743]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20743]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20743]	growth	37 °C
[Ref.: #31117]	optimum	37 °C
[Ref.: #62295]	growth	37 °C
[Ref.: #67771]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #31117]			optimum	6.5
[Ref.: #31117]			growth	5.5-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #20743]	Oxygen tolerance	anaerobe
[Ref.: #31117]	Oxygen tolerance	anaerobe
[Ref.: #62295]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	anaerobe

[Ref.: #31117]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %91.472

[Ref.: #31117]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68367]	cellobiose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	D-glucose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	D-mannitol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	D-mannose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68367]	D-xylose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	esculin ChEBI	-	hydrolysis	* from API 20A
[Ref.: #31117]	glucose ChEBI	+	carbon source
[Ref.: #68367]	glycerol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	L-arabinose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68367]	L-rhamnose ChEBI	-	builds acid from	* from API 20A
[Ref.: #31117]	lactose ChEBI	+	carbon source
[Ref.: #68367]	lactose ChEBI	+	builds acid from	* from API 20A
[Ref.: #31117]	maltose ChEBI	+	carbon source
[Ref.: #68367]	maltose ChEBI	+	builds acid from	* from API 20A
[Ref.: #31117]	mannose ChEBI	+	carbon source
[Ref.: #68367]	melezitose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #31117]	raffinose ChEBI	+	carbon source
[Ref.: #68367]	raffinose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68367]	salicin ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	sorbitol ChEBI	-	builds acid from	* from API 20A
[Ref.: #31117]	sucrose ChEBI	+	carbon source
[Ref.: #68367]	sucrose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	trehalose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	tryptophan ChEBI	-	energy source	* from API 20A, API rID32A
[Ref.: #68367]	urea ChEBI	-	hydrolysis	* from API 20A, API rID32A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68367]		indole ChEBI	no	* from API 20A, API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A, API 20A

	Enzyme	Enzyme activity	EC number
[Ref.: #31117]	acid phosphatase	+	3.1.3.2
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #31117]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	+	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	+		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A, API 20A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #31117]	gelatinase	+
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A, API 20A
	Only first 10 entries are displayed. Click here to see all.

API® 20A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Indole productionIND	Urease/urea hydrolysisURE	Acid from D-glucoseGLU	Acid from D-mannitolMAN	Acid from lactoseLAC	Acid from sucroseSAC	Acid from maltoseMAL	Acid from salicinSAL	Acid from D-xyloseXYL	Acid from L-arabinoseARA	Gelatinase/gelatin hydrolysisGEL	Esculin hydrolysis/beta-glucosidaseESC	Acid from glycerolGLY	Acid from cellobioseCEL	Acid from D-mannoseMNE	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from sorbitolSOR	Acid from L-rhamnoseRHA	Acid from trehaloseTRE	CatalaseCAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
[Ref.: #20743]	2098	-	-	+	-	+	+	+	-	-	-	+/-	-	-	-	+	-	+	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #20743]	12460	-	+/-	-	+	+	+	-	-	-	+	-	-	-	+	-	-	+	+	-	+	-	-	-	-	+	-	-	-	-
[Ref.: #20743]	13407	-	+/-	-	+	+	+	-	-	-	+	-	-	-	+	-	-	+	+	-	+	-	+/-	-	-	+	-	+/-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20743]	Sample type/isolated from	biopsy from small intestine of child with coeliac disease
[Ref.: #20743]	Geographic location (country and/or sea, region)	Umea
[Ref.: #20743]	Country	Sweden
[Ref.: #20743]	Country ISO 3 Code	SWE
[Ref.: #20743]	Continent	Europe

[Ref.: #62295]	Sample type/isolated from	Jejunal biopsy of celiac disease patient
[Ref.: #62295]	Sampling date	2007-11-09
[Ref.: #62295]	Geographic location (country and/or sea, region)	Umeå
[Ref.: #62295]	Country	Sweden
[Ref.: #62295]	Country ISO 3 Code	SWE
[Ref.: #62295]	Continent	Europe

[Ref.: #67771]	Sample type/isolated from	From biopsy from small intestine of child with coeliac disease
[Ref.: #67771]	Geographic location (country and/or sea, region)	Umea
[Ref.: #67771]	Country	Sweden
[Ref.: #67771]	Country ISO 3 Code	SWE
[Ref.: #67771]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Patient	#Biopsy
#Host	#Human	#Child
#Host Body-Site	#Gastrointestinal tract	#Small intestine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ778983 (>99% sequence identity) for Prevotella jejuni from Microbeatlas

Aquatic Samples	55
Soil Samples	64
Animal Samples	7656
Plant Samples	51
Total Samples	7826

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20743]	Prevotella jejuni strain CD3:28 16S ribosomal RNA gene, partial sequence	JQ778983	1484	GenBank ENA	1177574 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Prevotella jejuni DSM 26989	GCA_900187995	scaffold	GenBank ENA	1177574 tax ID	*
[Ref.: #66792]	Prevotella jejuni strain DSM 26989	1177574.3	wgs	PATRIC	1177574 tax ID	*
[Ref.: #66792]	Prevotella jejuni DSM 26989	2724679806	draft	JGI IMG/M	1177574 tax ID	*

[Ref.: #20743]	GC-content	41.7 mol%	sequence analysis
[Ref.: #31117]	GC-content	41.7 mol%
[Ref.: #67771]	GC-content	41.7 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Prevotella jejuni DSM 26989 NCBI: GCA_900187995.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	95.234	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	89.391	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	95.456	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.472	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.829	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88	yes

Availability in culture collections External links

[Ref.: #20743]

Culture collection no.

DSM 26989, CCUG 60371, KCTC 15415

[Ref.: #88269]

SI-ID 402495

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Prevotella jejuni sp. nov., isolated from the small intestine of a child with coeliac disease.	Hedberg ME, Israelsson A, Moore ERB, Svensson-Stadler L, Wai SN, Pietz G, Sandstrom O, Hernell O, Hammarstrom ML, Hammarstrom S	Int J Syst Evol Microbiol	10.1099/ijs.0.052647-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20743

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26989

#31117

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27446 (see below)

#62295 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60371

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68367

Automatically annotated from API 20A .

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88269

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402495.1 )

#27446

IJSEM 4218 2013 ( DOI 10.1099/ijs.0.052647-0 , PubMed 23793857 )

* These data were automatically processed and therefore are not curated

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Prevotella jejuni DSM 26989

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