Name: Pseudoalteromonas atlantica DSM 6839
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23828

Type strain:

Species: Pseudoalteromonas atlantica

Culture col. no.: DSM 6839, ATCC 19262, IAM 12927, JCM 8845, LMG 2138, NCIMB 301, NCTC 10685, CECT 579, CGMCC 1.2911, CIP 104721, CIP 63.28, IAM 12376, NBRC 103033

Strain history: M. Akagawa-Matsushita <-- IAM 12927 <-- NCMB 301 <-- W. Yaphe.

NCBI tax ID(s): 1871086 (species)

SI-ID 6668

LMG 2138, ATCC 19262, NCMB 301, NCTC 10685, LMG 2288, LMG 2139, NCIB 8959, LMG 2140, IAM 12927, CIP 104721, JCM 8845, NCIMB 301, DSM 6839, DSM 6840, IAM 12376, CIP 59.31, CIP 63.28, CECT 579, NCIMB 8959, CCUG 2345, NBRC 103033, CCUG 2345 A

Other strains from Pseudoalteromonas atlantica

P. atlantica CIP 104721, ATCC 19262, IAM 12927, ... (type strain)
P. atlantica DSM 6840, CIP 59.31, LMG 2139, ...
P. atlantica 512-M, CIP 103669, IAM 14161, JCM ...
P. atlantica 512-T, CIP 103670, IAM 14162, JCM ...
P. atlantica 512-W, CIP 103671, IAM 14163, JCM ...
P. atlantica 511-T, CIP 103672, IAM 14164, JCM ...
P. atlantica T9, CIP 103673, IAM 14165, JCM ...
P. atlantica CCUG 16155
P. atlantica CCUG 61125
P. atlantica CCUG 61127

Section

Pseudoalteromonas atlantica DSM 6839 is a psychrophilic bacterium of the family Pseudoalteromonadaceae.

psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Pseudoalteromonadaceae*
	Genus	*Pseudoalteromonas*
	Species	**Pseudoalteromonas atlantica**
	Full Scientific Name (LPSN)	Pseudoalteromonas atlantica (Akagawa-Matsushita et al. 1992) Gauthier et al. 1995

Synonym

Alteromonas atlantica

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20483]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #20483]

Culture medium growth

[Ref.: #20483]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20483]

Culture medium composition

expand / minimize

[Ref.: #42031]

Culture medium

Marine agar (MA)

[Ref.: #42031]

Culture medium growth

[Ref.: #42031]

Culture medium composition

expand / minimize

[Ref.: #116536]

Culture medium

CIP Medium 13

[Ref.: #116536]

Culture medium growth

[Ref.: #116536]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #20483]	growth	20 °C
[Ref.: #42031]	growth	22 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #20483]	Temperature range	psychrophilic
[Ref.: #42031]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-8

	Enzymes	Enzyme	EC number
[Ref.: #67770]		agarase	3.2.1.81

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Seaweed (Rhodymenia palmata) at Point Pleasant Park
[Ref.: #67770]	Host species	Rhodymenia palmata
[Ref.: #67770]	Geographic location (country and/or sea, region)	Halifax, Nova Scotia
[Ref.: #67770]	Country	Canada
[Ref.: #67770]	Country ISO 3 Code	CAN
[Ref.: #67770]	Continent	North America

[Ref.: #42031]	Geographic location (country and/or sea, region)	Halafix, Nova Scotia
[Ref.: #42031]	Country	Canada
[Ref.: #42031]	Country ISO 3 Code	CAN
[Ref.: #42031]	Continent	North America
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	A.atlantica 16S rRNA gene (IAM 12927T)	X82134	1423	ENA	288 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudoalteromonas atlantica strain NBRC 103033	288.11	wgs	PATRIC	288 tax ID	*

[Ref.: #67770]

GC-content

41.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudoalteromonas atlantica strain NBRC 103033 PATRIC: 288.11
[Ref.: #69480]	gram-positive	no	99.059	no
[Ref.: #69480]	anaerobic	no	97.802	no
[Ref.: #69480]	halophile	yes	61.587	no
[Ref.: #69480]	spore-forming	no	96.284	no
[Ref.: #69480]	glucose-util	yes	93.489	no
[Ref.: #69480]	motile	yes	92.026	no
[Ref.: #69480]	flagellated	yes	87.301	no
[Ref.: #69480]	aerobic	yes	90.656	no
[Ref.: #69480]	thermophile	no	99.068	no
[Ref.: #69480]	glucose-ferment	no	77.907	no

Availability in culture collections External links

[Ref.: #20483]

Culture collection no.

DSM 6839, ATCC 19262, IAM 12927, JCM 8845, LMG 2138, NCIMB 301, NCTC 10685, CECT 579, CGMCC 1.2911, CIP 104721, CIP 63.28, IAM 12376, NBRC 103033

[Ref.: #87854]

SI-ID 6668

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Production and characterization of a novel thermostable extracellular agarase from Pseudoalteromonas hodoensis newly isolated from the West Sea of South Korea.	Chi WJ, Park JS, Kang DK, Hong SK	Appl Biochem Biotechnol	10.1007/s12010-014-0958-3	2014	*
Pathogenicity	Combinatorial materials research applied to the development of new surface coatings III. Utilisation of a high-throughput multiwell plate screening method to rapidly assess bacterial biofilm retention on antifouling surfaces.	Stafslien S, Daniels J, Chisholm B, Christianson D	Biofouling	10.1080/08927010601127311	2007	*
Genetics	Investigation of the role of a beta(1-4) agarase produced by Pseudoalteromonas gracilis B9 in eliciting disease symptoms in the red alga Gracilaria gracilis.	Schroeder DC, Jaffer MA, Coyne VE	Microbiology (Reading)	10.1099/mic.0.26513-0	2003	*
Cultivation	[Diversity in the monosaccharide composition of antigenic polysaccharides from proteobacteria Pseudoalteromonas and Marinomonas genera].	Gorshkova NM, Gorshkova RP, Ivanova EP, Nazarenko EL, Zubkov VA	Mikrobiologiia		2001	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20483

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6839

#42031 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87854

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID6668.1 )

#116536 Collection of Institut Pasteur ; Curators of the CIP; CIP 104721
* These data were automatically processed and therefore are not curated

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Pseudoalteromonas atlantica strain NBRC 103033

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