Pseudoalteromonas atlantica (ATCC 19262, IAM 12927, JCM 8845)

Name: Pseudoalteromonas atlantica (ATCC 19262, IAM 12927, JCM 8845)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23828

Type strain

Culture col. no. ATCC 19262 IAM 12927 JCM 8845 LMG 2138 NCIMB 301 8 more

NCBI tax ID(s) 1871086 288

Special Collections DSMZ JCM CIP

History M. Akagawa-Matsushita <-- IAM 12927 <-- NCMB 301 <-- W. Yaphe. <- LMG; LMG 2138 <- CCEB <- J. M. Shewan, NCMB <- W. Yaphe, ARL. Deposited as Pseudomonas atlantica

Links

Pseudoalteromonas atlantica DSM 6839 is a bacterium of the family Pseudoalteromonadaceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 6668

LMG 2138,ATCC 19262,NCMB 301,NCTC 10685,LMG 2288,LMG 2139,NCIB 8959,LMG 2140,DSM 7451,DSM 7450,IAM 12927,CIP 104721,JCM 8845,NCIMB 301,DSM 6839,DSM 6840,IAM 12376,CIP 59.31,CIP 63.28,CECT 579,NCIMB 8959,CCUG 2345,NBRC 103033,CCUG 2345 A

@ref 20215

Last LPSN update 2026-02-09 11:23:49

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Pseudoalteromonadaceae

Genus Pseudoalteromonas

Species Pseudoalteromonas atlantica

Full scientific name Pseudoalteromonas atlantica (Akagawa-Matsushita et al. 1992) Gauthier et al. 1995

Synonyms (1)

Alteromonas atlantica

BacDive ID	Other strains from **Pseudoalteromonas atlantica** (10)	Type strain
13050	P. atlantica DSM 6840, CIP 59.31, LMG 2139, NCIB 8959, ... (type strain)
174334	P. atlantica CIP 104721, ATCC 19262, IAM 12927, JCM 8845, ... (type strain)
135331	P. atlantica 512-M, CIP 103669, IAM 14161, JCM 8846
135332	P. atlantica 512-T, CIP 103670, IAM 14162, JCM 8847
135333	P. atlantica 512-W, CIP 103671, IAM 14163, JCM 8848
135334	P. atlantica 511-T, CIP 103672, IAM 14164, JCM 8849
135335	P. atlantica T9, CIP 103673, IAM 14165, JCM 8850
143012	P. atlantica CCUG 16155
156312	P. atlantica CCUG 61125
156314	P. atlantica CCUG 61127

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	100
125439	negative	99.7

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
20483	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
42031	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
116536	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
20483	positive	growth	20
42031	positive	growth	22
67770	positive	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.9

Spore formation

@ref	Spore formation	Confidence
125439		99.7

Observation

67770

Observationquinones: Q-8

Enzymes

@ref	Value	Ec
67770	agarase	3.2.1.81

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
42031			Halafix, Nova Scotia	Canada	CAN	North America
67770	Seaweed (Rhodymenia palmata) at Point Pleasant Park	Rhodymenia palmata	Halifax, Nova Scotia	Canada	CAN	North America

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
124043	ASM798874v1 assembly for Pseudoalteromonas atlantica NBRC 103033	contig	GCA_007988745	288.11	288	52.29

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
67770	A.atlantica 16S rRNA gene (IAM 12927T)	X82134	1423	288
124043	Pseudoalteromonas atlantica strain NBRC 103033 16S ribosomal RNA gene, partial sequence.	OQ626017	1364	288
124043	Pseudoalteromonas atlantica strain NBRC 103033 16S ribosomal RNA gene, partial sequence.	MW198100	601	288

GC content

@ref	GC-content (mol%)	Method
67770	41.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudoalteromonas atlantica strain NBRC 103033
PATRIC: 288.11

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.70	no
125439	motility	BacteriaNetⓘ	yes	58.40	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudoalteromonas atlantica strain NBRC 103033
PATRIC: 288.11

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	96.21	no
125438	spore-forming	spore-formingⓘ	no	84.91	no
125438	aerobic	aerobicⓘ	yes	76.21	no
125438	thermophilic	thermophileⓘ	no	99.00	yes
125438	flagellated	motile2+ⓘ	yes	86.76	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Draft Genome Sequence of the Polysaccharide-Degrading Marine Bacterium Pseudoalteromonas sp. Strain A601.	Li J, Cheng Y, Wang D, Li J, Wang Y, Han W, Li F.	Genome Announc	10.1128/genomea.00590-17	2017
Pathogenicity	New Benthic Cyanobacteria from Guadeloupe Mangroves as Producers of Antimicrobials.	Duperron S, Beniddir MA, Durand S, Longeon A, Duval C, Gros O, Bernard C, Bourguet-Kondracki ML.	Mar Drugs	10.3390/md18010016	2019
	Excision of IS492 requires flanking target sequences and results in circle formation in Pseudoalteromonas atlantica.	Perkins-Balding D, Duval-Valentin G, Glasgow AC.	J Bacteriol	10.1128/jb.181.16.4937-4948.1999	1999
Enzymology	Minimally invasive detection of Piscirickettsia salmonis in cultivated salmonids via the PCR.	Marshall S, Heath S, Henriquez V, Orrego C.	Appl Environ Microbiol	10.1128/aem.64.8.3066-3069.1998	1998
	From broad-spectrum biocides to quorum sensing disruptors and mussel repellents: antifouling profile of alkyl triphenylphosphonium salts.	Martin-Rodriguez AJ, Babarro JM, Lahoz F, Sanson M, Martin VS, Norte M, Fernandez JJ.	PLoS One	10.1371/journal.pone.0123652	2015
Enzymology	Production and characterization of a novel thermostable extracellular agarase from Pseudoalteromonas hodoensis newly isolated from the West Sea of South Korea.	Chi WJ, Park JS, Kang DK, Hong SK	Appl Biochem Biotechnol	10.1007/s12010-014-0958-3	2014
Pathogenicity	Combinatorial materials research applied to the development of new surface coatings III. Utilisation of a high-throughput multiwell plate screening method to rapidly assess bacterial biofilm retention on antifouling surfaces.	Stafslien S, Daniels J, Chisholm B, Christianson D	Biofouling	10.1080/08927010601127311	2007
Genetics	Investigation of the role of a beta(1-4) agarase produced by Pseudoalteromonas gracilis B9 in eliciting disease symptoms in the red alga Gracilaria gracilis.	Schroeder DC, Jaffer MA, Coyne VE	Microbiology (Reading)	10.1099/mic.0.26513-0	2003
Cultivation	[Diversity in the monosaccharide composition of antigenic polysaccharides from proteobacteria Pseudoalteromonas and Marinomonas genera].	Gorshkova NM, Gorshkova RP, Ivanova EP, Nazarenko EL, Zubkov VA	Mikrobiologiia		2001

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20483	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6839
#42031	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#116536	Collection of Institut Pasteur ; Curators of the CIP; CIP 104721
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudoalteromonas atlantica (ATCC 19262, IAM 12927, JCM 8845)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Enzymes

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_007988745

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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