Name: Gluconobacter cerevisiae R-49665
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23501

Type strain:

Species: Gluconobacter cerevisiae

Strain Designation: R-49665

Culture col. no.: DSM 27644, LMG 27748, CIP 110637

Strain history: CIP <- 2013, P. Vandamme, Ghent Univ., Ghent, Belgium: strain R-49665

NCBI tax ID(s): 1379734 (species)

SI-ID 390638

LMG 27748, DSM 27644, CIP 110637

Special Collections

DSMZ
CIP

Section

Gluconobacter cerevisiae R-49665 is a Gram-negative bacterium that was isolated from fermenting lambic beer.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Gluconobacter*
	Species	**Gluconobacter cerevisiae**
	Full Scientific Name (LPSN)	Gluconobacter cerevisiae Spitaels et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #118211]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.333

[Ref.: #118211]	Cell shape	rod-shaped

[Ref.: #118211]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20592]

Culture medium

YPM MEDIUM (DSMZ Medium 360)

[Ref.: #20592]

Culture medium growth

[Ref.: #20592]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20592]

Culture medium composition

expand / minimize

[Ref.: #20592]

Culture medium

GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105)

[Ref.: #20592]

Culture medium growth

[Ref.: #20592]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20592]

Culture medium composition

expand / minimize

[Ref.: #118211]

Culture medium

CIP Medium 72

[Ref.: #118211]

Culture medium growth

[Ref.: #118211]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #20592]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %90.986
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20592]	Sample type/isolated from	fermenting lambic beer
[Ref.: #20592]	Geographic location (country and/or sea, region)	Flanders
[Ref.: #20592]	Country	Belgium
[Ref.: #20592]	Country ISO 3 Code	BEL
[Ref.: #20592]	Continent	Europe

[Ref.: #118211]	Sample type/isolated from	Fermenting lambic beer
[Ref.: #118211]	Geographic location (country and/or sea, region)	Flanders, Belgium
[Ref.: #118211]	Country	Belgium
[Ref.: #118211]	Country ISO 3 Code	BEL
[Ref.: #118211]	Continent	Europe
[Ref.: #118211]	Isolation date	2011-02-03
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Fermented
#Engineered	#Food production	#Beverage

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HG329624 (>99% sequence identity) for Gluconobacter from Microbeatlas

Aquatic Samples	546
Soil Samples	721
Animal Samples	2856
Plant Samples	858
Total Samples	4981

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20592]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118211]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20592]	Gluconobacter cerevisiae partial 16S rRNA gene, strain LMG 27748	HG329624	1436	GenBank ENA	1379734 tax ID
[Ref.: #124043]	Gluconobacter cerevisiae genomic DNA containing 16S-23S intergenic spacer region, strain LMG 27748	HG424630	704	GenBank ENA	1379734 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Gluconobacter cerevisiae LMG 27748	GCA_015244675	contig	GenBank ENA	1379734 tax ID	*
[Ref.: #66792]	Gluconobacter cerevisiae DSM 27644	GCA_018811965	contig	GenBank ENA	1379734 tax ID	*
[Ref.: #66792]	Gluconobacter cerevisiae strain DSM 27644	1379734.10	wgs	PATRIC	1379734 tax ID	*
[Ref.: #66792]	Gluconobacter cerevisiae strain LMG 27748	1379734.8	wgs	PATRIC	1379734 tax ID	*

[Ref.: #20592]

GC-content

58.0 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Gluconobacter cerevisiae strain LMG 27748 PATRIC: 1379734.8
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gluconobacter cerevisiae strain DSM 27644 PATRIC: 1379734.10
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.333	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	87.818	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.986	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	78.732	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.671	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	67.516	no

Availability in culture collections External links

[Ref.: #20592]

Culture collection no.

DSM 27644, LMG 27748, CIP 110637

[Ref.: #87613]

SI-ID 390638

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gluconobacter cerevisiae sp. nov., isolated from the brewery environment.	Spitaels F, Wieme A, Balzarini T, Cleenwerck I, Van Landschoot A, De Vuyst L, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.059311-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20592

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27644

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87613

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID390638.1 )

#118211 Collection of Institut Pasteur ; Curators of the CIP; CIP 110637

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Gluconobacter cerevisiae strain LMG 27748

Gluconobacter cerevisiae strain DSM 27644

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