Name: Caulobacter ginsengisoli DSM 18695
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2337

Type strain:

Species: Caulobacter ginsengisoli

Culture col. no.: DSM 18695, KCTC 12788, Gsoil 317

Strain history: <- S. T. Lee, KAIST <- W.-T. Im, KAIST; Gsoil 317

NCBI tax ID(s): 400775 (species)

SI-ID 405098

DSM 18695

Special Collections

DSMZ
KCTC

Section

Caulobacter ginsengisoli DSM 18695 is a bacterium that was isolated from soil of a ginseng field.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Caulobacterales*
	Family	*Caulobacteraceae*
	Genus	*Caulobacter*
	Species	**Caulobacter ginsengisoli**
	Full Scientific Name (LPSN)	Caulobacter ginsengisoli Liu et al. 2011

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7661]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7661]

Culture medium growth

[Ref.: #7661]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7661]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7661]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7661]	Sample type/isolated from	soil of a ginseng field
[Ref.: #7661]	Geographic location (country and/or sea, region)	Pocheon Province
[Ref.: #7661]	Country	Republic of Korea
[Ref.: #7661]	Country ISO 3 Code	KOR
[Ref.: #7661]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB271055 (>99% sequence identity) for Caulobacter ginsengisoli subclade from Microbeatlas

Aquatic Samples	11
Soil Samples	106
Animal Samples	4
Plant Samples	49
Total Samples	170

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7661]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7661]	Caulobacter ginsengisoli gene for 16S rRNA, partial sequence	AB271055	1421	GenBank ENA	400775 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caulobacter ginsengisoli DSM 18695	2928247817	draft	JGI IMG/M	400775 tax ID	*

[Ref.: #7661]

GC-content

65.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #7661]

Culture collection no.

DSM 18695, KCTC 12788, Gsoil 317

[Ref.: #71894]

SI-ID 405098

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Caulobacter ginsengisoli sp. nov., a novel stalked bacterium isolated from ginseng cultivating soil.	Liu QM, Ten LN, Im WT, Lee ST, Yoon MH	J Microbiol Biotechnol	JMB020-01-02	2010	*

References

#7661

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18695

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#71894

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405098.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Caulobacter ginsengisoli in external resources:
SILVA
BRENDA
PANGAEA
GBIF