Name: Phaseolibacter flectens DSM 27043
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23016

Type strain:

Species: Phaseolibacter flectens

Culture col. no.: DSM 27043, ATCC 12775, CFBP 3281, ICMP 745, LMG 2187, NCPPB 539, CCUG 32859

Strain history: <- NCPPB <- J. C. Johnson

NCBI tax ID(s): 1336237 (strain), 86187 (species)

SI-ID 4052

LMG 2187, ATCC 12775, ICMP 745, NCPPB 539, PDDCC 745, CCUG 32859, ICMP 3656, CFBP 3281, PDDCC 3656, DSM 27043

Special Collections

Section

Phaseolibacter flectens DSM 27043 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from French bean Phaseolus vulgaris.

Gram-negative
motile
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Erwiniaceae*
	Genus	*Phaseolibacter*
	Species	**Phaseolibacter flectens**
	Full Scientific Name (LPSN)	Phaseolibacter flectens (Johnson 1956) Halpern et al. 2013

Synonym

Pseudomonas flectens

Information on morphological and physiological properties Morphology

[Ref.: #30332]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %97.994

[Ref.: #30332]	Cell length	1.75 µm

[Ref.: #30332]	Cell width	1.3 µm

[Ref.: #30332]	Cell shape	rod-shaped

[Ref.: #30332]	Motility	yes

[Ref.: #30332]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19204]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #19204]

Culture medium growth

[Ref.: #19204]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19204]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #19204]	growth	28 °C
[Ref.: #30332]	growth	04-44 °C
[Ref.: #30332]	optimum	29 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30332]

Oxygen tolerance

facultative anaerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %94.335
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30332]	arabinose ChEBI	+	carbon source
[Ref.: #30332]	citrate ChEBI	+	carbon source
[Ref.: #30332]	D-tryptophan ChEBI	+	carbon source
[Ref.: #30332]	esculin ChEBI	+	hydrolysis
[Ref.: #30332]	fructose ChEBI	+	carbon source
[Ref.: #30332]	fucose ChEBI	+	carbon source
[Ref.: #30332]	glucose ChEBI	+	carbon source
[Ref.: #30332]	glycerol ChEBI	+	carbon source
[Ref.: #30332]	nitrate ChEBI	+	reduction
[Ref.: #30332]	ribose ChEBI	+	carbon source
[Ref.: #30332]	sucrose ChEBI	+	carbon source
[Ref.: #30332]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30332]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19204]	Sample type/isolated from	French bean Phaseolus vulgaris
[Ref.: #19204]	Host species	Phaseolus vulgaris
[Ref.: #19204]	Country	Australia
[Ref.: #19204]	Country ISO 3 Code	AUS
[Ref.: #19204]	Continent	Australia and Oceania

[Ref.: #51222]	Sample type/isolated from	Phaseolus vulgaris
[Ref.: #51222]	Sampling date	1956
[Ref.: #51222]	Country	Australia
[Ref.: #51222]	Country ISO 3 Code	AUS
[Ref.: #51222]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19204]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19204]	Phaseolibacter flectens gene for 16S rRNA, strain: ATCC 12775	AB021400	1522	GenBank ENA	1336237 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Phaseolibacter flectens ATCC 12775	GCA_000518745	scaffold	GenBank ENA	1336237 tax ID	*
[Ref.: #66792]	Pseudomonas flectens ATCC 12775	1336237.3	wgs	PATRIC	1336237 tax ID	*
[Ref.: #66792]	Phaseolibacter flectens ATCC 12775	2545555808	draft	JGI IMG/M	1336237 tax ID	*

[Ref.: #30332]

GC-content

44.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Phaseolibacter flectens ATCC 12775 ATCC 12775 NCBI: GCA_000518745.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Phaseolibacter flectens ATCC 12775 ATCC 12775 NCBI: GCA_000518745.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.994	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.196	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	63.776	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	94.335	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	57.386	no

Availability in culture collections External links

[Ref.: #19204]

Culture collection no.

DSM 27043, ATCC 12775, CFBP 3281, ICMP 745, LMG 2187, NCPPB 539, CCUG 32859

[Ref.: #87256]

SI-ID 4052

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Transfer of Pseudomonas flectens Johnson 1956 to Phaseolibacter gen. nov., in the family Enterobacteriaceae, as Phaseolibacter flectens gen. nov., comb. nov.	Halpern M, Fridman S, Aizenberg-Gershtein Y, Izhaki I	Int J Syst Evol Microbiol	10.1099/ijs.0.033654-0	2012	*
Genetics	High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775(T), a plant pathogen of French bean pods.	Aizenberg-Gershtein Y, Izhaki I, Lapidus A, Copeland A, Reddy T, Huntemann M, Pillay M, Markowitz V, Goker M, Woyke T, Klenk HP, Kyrpides NC, Halpern M	Stand Genomic Sci	10.1186/s40793-015-0127-5	2016	*
Phylogeny	Rosenbergiella nectarea gen. nov., sp. nov., in the family Enterobacteriaceae, isolated from floral nectar.	Halpern M, Fridman S, Atamna-Ismaeel N, Izhaki I	Int J Syst Evol Microbiol	10.1099/ijs.0.052217-0	2013	*

References

#19204

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27043

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30332

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26673 (see below)

#51222 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 32859

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87256

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID4052.1 )

#26673

IJSEM 268 2013 ( DOI 10.1099/ijs.0.033654-0 , PubMed 22407791 )

* These data were automatically processed and therefore are not curated

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Phaseolibacter flectens ATCC 12775 ATCC 12775

Phaseolibacter flectens ATCC 12775 ATCC 12775

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