Name: Caballeronia grimmiae R27
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 22942

Type strain:

Species: Caballeronia grimmiae

Strain Designation: R27

Culture col. no.: DSM 25160, CGMCC 1.11013, LMG 27580

Strain history: <- Y. Li, Capital Normal University, College of Life Science, Beijing, China; R27 <- B. Kong, S. Liu, Y. Li

NCBI tax ID(s): 1071679 (species)

SI-ID 388165

LMG 27580, CGMCC 1.11013, DSM 25160

Special Collections

Section

Caballeronia grimmiae R27 is an aerobe, Gram-negative, motile bacterium that was isolated from moss Grimmia montana.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Caballeronia*
	Species	**Caballeronia grimmiae**
	Full Scientific Name (LPSN)	Caballeronia grimmiae (Tian et al. 2013) Dobritsa and Samadpour 2016

	Synonym	Paraburkholderia grimmiae
	Synonym	Burkholderia grimmiae

Information on morphological and physiological properties Morphology

[Ref.: #30831]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.5

[Ref.: #30831]	Cell length	1.75 µm

[Ref.: #30831]	Cell width	0.5 µm

[Ref.: #30831]	Cell shape	rod-shaped

[Ref.: #30831]	Motility	yes

[Ref.: #19336]	Type of hemolysis	gamma
[Ref.: #19336]	Incubation period	1-2 days

[Ref.: #30831]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19336]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #19336]

Culture medium growth

[Ref.: #19336]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19336]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #19336]	growth	30 °C
[Ref.: #30831]	growth	10-40 °C
[Ref.: #30831]	optimum	29 °C

	pH	Kind of pH		pH
[Ref.: #30831]			optimum	7.25
[Ref.: #30831]			growth	4.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30831]	Oxygen tolerance	aerobe
[Ref.: #69480]	Oxygen tolerance	aerobe Confidence in %94.056

[Ref.: #30831]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %90.475
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30831]		NaCl		growth	0-1	%

[Ref.: #30831]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30831]	acetate ChEBI	+	carbon source
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #30831]	alanine ChEBI	+	carbon source
[Ref.: #30831]	arabinose ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #30831]	asparagine ChEBI	+	carbon source
[Ref.: #30831]	aspartate ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #30831]	DL-carnitine ChEBI	+	carbon source
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #30831]	formate ChEBI	+	carbon source
[Ref.: #30831]	fucose ChEBI	+	carbon source
[Ref.: #30831]	galactonate ChEBI	+	carbon source
[Ref.: #30831]	galactose ChEBI	+	carbon source
[Ref.: #30831]	galacturonate ChEBI	+	carbon source
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #30831]	gluconate ChEBI	+	carbon source
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #30831]	glucosamine ChEBI	+	carbon source
[Ref.: #30831]	glucose ChEBI	+	carbon source
[Ref.: #30831]	glucuronamide ChEBI	+	carbon source
[Ref.: #30831]	glutamate ChEBI	+	carbon source
[Ref.: #30831]	glycine ChEBI	+	carbon source
[Ref.: #30831]	histidine ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #30831]	L-arabitol ChEBI	+	carbon source
[Ref.: #30831]	lactose ChEBI	+	carbon source
[Ref.: #30831]	leucine ChEBI	+	carbon source
[Ref.: #30831]	malate ChEBI	+	carbon source
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #30831]	malonate ChEBI	+	carbon source
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #30831]	mannitol ChEBI	+	carbon source
[Ref.: #30831]	mannose ChEBI	+	carbon source
[Ref.: #30831]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #30831]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #30831]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #30831]	phenylalanine ChEBI	+	carbon source
[Ref.: #30831]	proline ChEBI	+	carbon source
[Ref.: #30831]	quinate ChEBI	+	carbon source
[Ref.: #30831]	ribitol ChEBI	+	carbon source
[Ref.: #30831]	serine ChEBI	+	carbon source
[Ref.: #30831]	sorbitol ChEBI	+	carbon source
[Ref.: #30831]	succinate ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #30831]	tween 40 ChEBI	+	carbon source
[Ref.: #30831]	tween 80 ChEBI	+	carbon source
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #30831]	urocanic acid ChEBI	+	carbon source
[Ref.: #30831]	xylitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #30831]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #19336]	catalase	+	1.11.1.6
[Ref.: #30831]	catalase	+	1.11.1.6
[Ref.: #30831]	cytochrome oxidase	+	1.9.3.1
[Ref.: #19336]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #30831]	urease	+	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #19336]	23887	+	-	-	-	-	-	-	-	+	+	+	+	+	-	+	-	-	+	-	-	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19336]	Sample type/isolated from	moss Grimmia montana
[Ref.: #19336]	Host species	Grimmia montana
[Ref.: #19336]	Geographic location (country and/or sea, region)	Beijing Songshan National Nature Reserve
[Ref.: #19336]	Country	China
[Ref.: #19336]	Country ISO 3 Code	CHN
[Ref.: #19336]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Moss

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN256678 (>99% sequence identity) for Burkholderia from Microbeatlas

Aquatic Samples	109
Soil Samples	1674
Animal Samples	488
Plant Samples	430
Total Samples	2701

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19336]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19336]	Burkholderia grimmiae strain R27 16S ribosomal RNA gene, partial sequence	JN256678	1492	GenBank ENA	1071679 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caballeronia grimmiae R27	GCA_000698555	contig	GenBank ENA	1071679 tax ID	*
[Ref.: #66792]	Caballeronia grimmiae CGMCC 1.11013	GCA_014636375	contig	GenBank ENA	1071679 tax ID	*
[Ref.: #66792]	Caballeronia grimmiae strain CGMCC 1.11013	1071679.6	wgs	PATRIC	1071679 tax ID	*
[Ref.: #66792]	Caballeronia grimmiae R27	2609460223	draft	JGI IMG/M	1071679 tax ID	*

[Ref.: #19336]	GC-content	64.6 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #30831]	GC-content	64.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Caballeronia grimmiae strain CGMCC 1.11013 PATRIC: 1071679.6
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Caballeronia grimmiae strain CGMCC 1.11013 PATRIC: 1071679.6
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.5	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.17	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.475	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	94.056	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.333	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	85.218	no

Availability in culture collections External links

[Ref.: #19336]

Culture collection no.

DSM 25160, CGMCC 1.11013, LMG 27580

[Ref.: #87190]

SI-ID 388165

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Burkholderia jiangsuensis sp. nov., a methyl parathion degrading bacterium, isolated from methyl parathion contaminated soil.	Liu XY, Li CX, Luo XJ, Lai QL, Xu JH	Int J Syst Evol Microbiol	10.1099/ijs.0.064444-0	2014	*
Phylogeny	Burkholderia grimmiae sp. nov., isolated from a xerophilous moss (Grimmia montana).	Tian Y, Kong BH, Liu SL, Li CL, Yu R, Liu L, Li YH	Int J Syst Evol Microbiol	10.1099/ijs.0.045492-0	2012	*

References

#19336

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25160

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30831

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27161 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87190

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID388165.1 )

#27161

IJSEM 2108 2013 ( DOI 10.1099/ijs.0.045492-0 , PubMed 23087167 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Caballeronia grimmiae in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Caballeronia grimmiae strain CGMCC 1.11013

Caballeronia grimmiae strain CGMCC 1.11013

Change proposal

Change proposal