Name: Priestia abyssalis DSM 25875
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 22926

Type strain:

Species: Priestia abyssalis

Culture col. no.: DSM 25875, CCTCC AB 2012074, NBRC 109102, SCSIO 15042

Strain history: <- J. Li, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China; SCSIO 15042

NCBI tax ID(s): 1221450 (species)

SI-ID 390794

DSM 25875, NBRC 109102

Special Collections

DSMZ

Section

Priestia abyssalis DSM 25875 is a spore-forming bacterium that was isolated from deep sea sediment.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Priestia*
	Species	**Priestia abyssalis**
	Full Scientific Name (LPSN)	Priestia abyssalis (You et al. 2013) Gupta et al. 2020

Synonym

Bacillus abyssalis

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19316]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #19316]

Culture medium growth

[Ref.: #19316]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19316]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #19316]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19316]	Sample type/isolated from	deep sea sediment
[Ref.: #19316]	Geographic location (country and/or sea, region)	South China Sea (112° 30.203 E, 18°1.654 N) at a depth of 2439 m
[Ref.: #19316]	Country	China
[Ref.: #19316]	Country ISO 3 Code	CHN
[Ref.: #19316]	Continent	Asia
[Ref.: #19316]	Geographic location	18.0275°/112.5030°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX232168 (>99% sequence identity) for Priestia abyssalis from Microbeatlas

Aquatic Samples	553
Soil Samples	2068
Animal Samples	292
Plant Samples	753
Total Samples	3666

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19316]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19316]	Bacillus abyssalis strain SCSIO 15042 16S ribosomal RNA gene, partial sequence	JX232168	1405	GenBank ENA	1221450 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Priestia abyssalis DSM 25875	GCA_002019595	scaffold	GenBank ENA	1221450 tax ID	*
[Ref.: #66792]	Bacillus abyssalis strain DSM 25875	1221450.3	wgs	PATRIC	1221450 tax ID	*

[Ref.: #19316]

GC-content

43.1 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Priestia abyssalis DSM 25875 NCBI: GCA_002019595.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Priestia abyssalis DSM 25875 NCBI: GCA_002019595.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	70.849	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	92.193	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	74.353	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	87.89	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.534	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	81.579	no

Availability in culture collections External links

[Ref.: #19316]

Culture collection no.

DSM 25875, CCTCC AB 2012074, NBRC 109102, SCSIO 15042

[Ref.: #87174]

SI-ID 390794

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus abyssalis sp. nov., isolated from a sediment of the South China Sea.	You ZQ, Li J, Qin S, Tian XP, Wang FZ, Zhang S, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-013-9875-7	2013	*
Phylogeny	Bacillus thaonhiensis sp. nov., a new species, was isolated from the forest soil of Kyonggi University by using a modified culture method.	Van Pham HT, Kim J	Curr Microbiol	10.1007/s00284-013-0443-1	2013	*

References

#19316

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25875

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87174

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID390794.1 )

* These data were automatically processed and therefore are not curated

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