Caryophanon latum (DSM 14151, NCIMB 9533, aa)

Name: Caryophanon latum (DSM 14151, NCIMB 9533, aa)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2289

Type strain

Strain Designation aa

Variant Isotype of BacDive ID 2291

Culture col. no. DSM 14151 NCIMB 9533 aa

NCBI tax ID(s) 33977

Special Collections DSMZ

Links

Caryophanon latum aa is a mesophilic prokaryote that was isolated from cow dung.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 9076

LMG 17312,ATCC 33407,NCIMB 9533,NCIB 9533,VKM B-105,KCTC 3403,DSM 14843

@ref 20215

Last LPSN update 2025-12-16 09:47:17

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Caryophanaceae

Genus Caryophanon

Species Caryophanon latum

Full scientific name Caryophanon latum Peshkoff 1939 (Approved Lists 1980)

BacDive ID	Other strains from **Caryophanon latum** (5)	Type strain
2291	C. latum DSM 14843, NCIMB 9533 (type strain)
2288	C. latum DSM 484
2290	C. latum J1, DSM 14837, NCIMB 702034
2292	C. latum Sa, DSM 14844, NCIMB 9534
100561	C. latum ST033261(HKI),

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5233	CARYOPHANON LATUM MEDIUM (DSMZ Medium 34)		Medium recipe at MediaDive	Name: CARYOPHANON LATUM MEDIUM (DSMZ Medium 34) Composition: Soy peptone 2.0 g/l Yeast extract 2.0 g/l Trypticase 2.0 g/l K2HPO4 1.0 g/l Na-acetate 1.0 g/l MgSO4 x 7 H2O 0.27 g/l Na glutamate 0.1 g/l Thiamine-HCl x 2 H2O 0.0002 g/l Biotin 5e-05 g/l Tris-HCl buffer

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5233	positive	growth	30	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

5233

Sample typecow dung

Taxonmaps

69479

Global distribution of 16S sequence AJ491302 (>99% sequence identity) for Caryophanon latum subclade from Microbeatlas

Aquatic Samples	9
Soil Samples	79
Animal Samples	153
Plant Samples	5
Total Samples	246

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5233	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM170032v1 assembly for Caryophanon latum DSM 14151	contig	GCA_001700325	33977.3	2886957807	33977	52.11

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5233	Caryophanon latum 16S rRNA gene, type strain DSM 14151T	AJ491302	1509		33977
124043	Caryophanon latum DNA containing 16S-23S intergenic spacer region, strain DSM 14151	LN998121	480		33977

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Caryophanon latum DSM 14151
NCBI: GCA_001700325

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	50.90	no
125439	motility	BacteriaNetⓘ	yes	57.70	no
125439	gram_stain	BacteriaNetⓘ	variable	70.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	86.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Caryophanon latum strain DSM 14151
PATRIC: 33977.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	77.06	no
125438	anaerobic	anaerobicⓘ	no	97.40	no
125438	spore-forming	spore-formingⓘ	yes	65.35	no
125438	aerobic	aerobicⓘ	yes	81.19	no
125438	thermophilic	thermophileⓘ	no	89.03	yes
125438	flagellated	motile2+ⓘ	yes	80.96	no

Literature

Title	Authors	Journal	DOI	Year
A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations.	Huang YJ, Kim E, Cox MJ, Brodie EL, Brown R, Wiener-Kronish JP, Lynch SV.	OMICS	10.1089/omi.2009.0100	2010

References

#5233	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14151
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Caryophanon latum (DSM 14151, NCIMB 9533, aa)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001700325

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media