Name: Arcobacter thereius strain 16389
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2099

Type strain:

Species: Arcobacter thereius

Strain Designation: strain 16389

Culture col. no.: DSM 23385, CCUG 56902, LMG 24486

Strain history: <- CCUG

NCBI tax ID(s): 1032240 (strain), 544718 (species)

SI-ID 302813

LMG 24486, CCUG 56902, DSM 23385

Section

Arcobacter thereius strain 16389 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from kidney and liver of an aborted pig foetus.

Gram-negative
motile
rod-shaped
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Arcobacteraceae*
	Genus	*Arcobacter*
	Species	**Arcobacter thereius**
	Full Scientific Name (LPSN)	Arcobacter thereius Houf et al. 2009

Synonym

Aliarcobacter thereius

Information on morphological and physiological properties Morphology

[Ref.: #29118]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #29118]	Cell length	2.5 µm

[Ref.: #29118]	Cell width	0.5 µm

[Ref.: #29118]	Cell shape	rod-shaped

[Ref.: #29118]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %92.82

[Ref.: #16820]	Type of hemolysis	alpha/beta
[Ref.: #16820]	Hemolysis ability	1

[Ref.: #61124]	Incubation period	1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16820]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #16820]

Culture medium growth

[Ref.: #16820]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16820]

Culture medium composition

expand / minimize

	Kind of temperature		Temperature
[Ref.: #16820]		growth	28 °C
[Ref.: #29118]		growth	18-22 °C
[Ref.: #61124]		growth	30 °C
[Ref.: #61124]	no	growth	37 °C

[Ref.: #16820]	Temperature range	mesophilic
[Ref.: #29118]	Temperature range	psychrophilic
[Ref.: #61124]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16820]	Oxygen tolerance	microaerophile
[Ref.: #29118]	Oxygen tolerance	aerobe
[Ref.: #61124]	Oxygen tolerance	microaerophile

[Ref.: #29118]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29118]		NaCl		growth	<4	%
[Ref.: #29118]		NaCl		optimum	2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68373]	acetate ChEBI	+	assimilation	* from API CAM
[Ref.: #68373]	citrate ChEBI	-	assimilation	* from API CAM
[Ref.: #68377]	D-fructose ChEBI	-	builds acid from	* from API NH
[Ref.: #68373]	D-glucose ChEBI	-	assimilation	* from API CAM
[Ref.: #68377]	D-glucose ChEBI	-	builds acid from	* from API NH
[Ref.: #68373]	hippurate ChEBI	-	hydrolysis	* from API CAM
[Ref.: #68373]	malate ChEBI	-	assimilation	* from API CAM
[Ref.: #68377]	maltose ChEBI	-	builds acid from	* from API NH
[Ref.: #29118]	nitrate ChEBI	+	reduction
[Ref.: #68373]	nitrate ChEBI	+	reduction	* from API CAM
[Ref.: #68377]	ornithine ChEBI	-	degradation	* from API NH
[Ref.: #68373]	propionate ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	succinate ChEBI	-	assimilation	* from API CAM
[Ref.: #68377]	sucrose ChEBI	-	builds acid from	* from API NH
[Ref.: #68373]	triphenyltetrazolium chloride ChEBI	+	reduction	* from API CAM
[Ref.: #68377]	tryptophan ChEBI	-	energy source	* from API NH
[Ref.: #68373]	urea ChEBI	-	hydrolysis	* from API CAM, API NH
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #68373]	cefazolin ChEBI	yes	224	µg	* from API CAM
[Ref.: #68373]	erythromycin ChEBI	yes	14	µg	* from API CAM
[Ref.: #68373]	nalidixic acid ChEBI	yes	84	µg	* from API CAM

	Metabolite production	Metabolite	Production
[Ref.: #68373]		hydrogen sulfide ChEBI	no	* from API CAM
[Ref.: #68377]		indole ChEBI	no	* from API NH

	Physiological tests	Metabolite	Indole test
[Ref.: #68377]		indole ChEBI	-	* from API NH

	Enzyme	Enzyme activity	EC number
[Ref.: #68373]	alkaline phosphatase	+	3.1.3.1	* from API CAM
[Ref.: #68377]	alkaline phosphatase	-	3.1.3.1	* from API NH
[Ref.: #68377]	beta-galactosidase	-	3.2.1.23	* from API NH
[Ref.: #68377]	beta-lactamase	-	3.5.2.6	* from API NH
[Ref.: #16820]	catalase	+	1.11.1.6
[Ref.: #29118]	catalase	+	1.11.1.6
[Ref.: #68373]	catalase	+	1.11.1.6	* from API CAM
[Ref.: #29118]	cytochrome oxidase	+	1.9.3.1
[Ref.: #16820]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68373]	esterase	+		* from API CAM
[Ref.: #68373]	gamma-glutamyltransferase	-	2.3.2.2	* from API CAM
[Ref.: #68373]	L-arginine arylamidase	-		* from API CAM
[Ref.: #68373]	L-aspartate arylamidase	-	3.4.11.21	* from API CAM
[Ref.: #68377]	lipase	-		* from API NH
[Ref.: #68377]	ornithine decarboxylase	-	4.1.1.17	* from API NH
[Ref.: #68373]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API CAM
[Ref.: #68377]	tryptophan deaminase	-	4.1.99.1	* from API NH
[Ref.: #68377]	urease	-	3.5.1.5	* from API NH, API CAM
	Only first 10 entries are displayed. Click here to see all.

API® CAM:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Reduction of nitrateNIT	EsteraseEST	Hippuric acidHIP	gamma-Glutamyl transferaseGGT	Reduction of Triphenyl tetrazolium chlorideTTC	Pyrrolidonyl arylamidasePYRA	L-arginine arylamidaseArgA	L-aspartic acid arylamidaseAspA	Alkaline phosphatasePAL	H2S productionH2S	Assimilation of D-glucoseGLU	Assimilation of succinateSUT	Growth inhibitionNAL	Growth inhibitionCFZ	Assimilation of acetateACE	Assimilation of propionic acidPROP	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Erythromycin resistance (+) sensitivity (-)ERO	CatalaseCAT
[Ref.: #16820]	3795	-	+	+	-	-	+	-	-	-	+	-	-	-	-	-	+	-	-	-	-	+

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #16820]	6199	-	-	-	-	-	-	-	-	-	-	+	-	-
[Ref.: #16820]	5673	-	-	-	-	-	-	-	-	-	-	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16820]	Sample type/isolated from	kidney and liver of an aborted pig foetus
[Ref.: #16820]	Country	Denmark
[Ref.: #16820]	Country ISO 3 Code	DNK
[Ref.: #16820]	Continent	Europe

[Ref.: #61124]	Sample type/isolated from	Porcine foetus,spontaneous porcine abortion
[Ref.: #61124]	Sampling date	1996
[Ref.: #61124]	Country	Denmark
[Ref.: #61124]	Country ISO 3 Code	DNK
[Ref.: #61124]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Suidae (Pig,Swine)
#Host Body-Site	#Urogenital tract	#Kidney
#Host Body-Site	#Organ	#Liver
#Host Body Product	#Urogenital tract	#Abort

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY314753 (>99% sequence identity) for Aliarcobacter from Microbeatlas

Aquatic Samples	1069
Soil Samples	61
Animal Samples	168
Plant Samples	31
Total Samples	1329

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16820]	Arcobacter thereius strain 16389 16S ribosomal RNA gene, partial sequence	AY314753	1410	ENA	1032240 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aliarcobacter thereius LMG 24486	GCA_024584025	contig	GenBank	1032240 tax ID	*
[Ref.: #66792]	Aliarcobacter thereius LMG 24486	GCA_001695395	scaffold	GenBank	1032240 tax ID	*
[Ref.: #66792]	Aliarcobacter thereius DSM 23385	GCA_005818985	contig	GenBank	544718 tax ID	*
[Ref.: #66792]	Arcobacter thereius LMG 24486	1032240.8	complete	PATRIC	1032240 tax ID	*
[Ref.: #66792]	Arcobacter thereius LMG 24486	1032240.3	complete	PATRIC	1032240 tax ID	*
[Ref.: #66792]	Arcobacter thereius strain DSM 23385	544718.59	wgs	PATRIC	544718 tax ID	*

[Ref.: #16820]

GC-content

28.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aliarcobacter thereius LMG 24486 LMG 24486 NCBI: GCA_004214815.1
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aliarcobacter thereius LMG 24486 LMG 24486 NCBI: GCA_004214815.1
[Ref.: #69480]	motile	yes	89.825	yes
[Ref.: #69480]	flagellated	yes	66.111	no
[Ref.: #69480]	gram-positive	no	98.669	no
[Ref.: #69480]	anaerobic	no	85.483	yes
[Ref.: #69480]	aerobic	no	93.726	no
[Ref.: #69480]	halophile	no	88.99	no
[Ref.: #69480]	spore-forming	no	94.857	yes
[Ref.: #69480]	glucose-util	no	90.839	yes
[Ref.: #69480]	thermophile	no	95.754	no
[Ref.: #69480]	glucose-ferment	no	92.856	no

Availability in culture collections External links

[Ref.: #16820]

Culture collection no.

DSM 23385, CCUG 56902, LMG 24486

[Ref.: #71746]

SI-ID 302813

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Characterization of the emerging zoonotic pathogen Arcobacter thereius by whole genome sequencing and comparative genomics.	Rovetto F, Carlier A, Van den Abeele AM, Illeghems K, Van Nieuwerburgh F, Cocolin L, Houf K	PLoS One	10.1371/journal.pone.0180493	2017	*
Phylogeny	'Arcobacter porcinus' sp. nov., a novel Arcobacter species uncovered by Arcobacter thereius.	Figueras MJ, Perez-Cataluna A, Salas-Masso N, Levican A, Collado L	New Microbes New Infect	10.1016/j.nmni.2016.11.014	2016	*
Phylogeny	Arcobacter thereius sp. nov., isolated from pigs and ducks.	Houf K, On SL, Coenye T, Debruyne L, De Smet S, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.006650-0	2009	*

References

#16820

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23385

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29118

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25544 (see below)

#61124 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56902

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68373

Automatically annotated from API CAM .

#68377

Automatically annotated from API NH .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71746

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID302813.1 )

#25544

IJSEM 2599 2009 ( DOI 10.1099/ijs.0.006650-0 , PubMed 19622651 )

* These data were automatically processed and therefore are not curated

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Aliarcobacter thereius LMG 24486 LMG 24486

Aliarcobacter thereius LMG 24486 LMG 24486

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