Name: Arcobacter cibarius KH-2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2096

Type strain:

Species: Arcobacter cibarius

Strain Designation: KH-2

Culture col. no.: DSM 17680, CCUG 48482, LMG 21996, CIP 108697, CECT 7203

Strain history: <- K. Houf, Depart. Veterinary Public Health, Merelbeke, Belgium; KH-2

NCBI tax ID(s): 1442598 (strain), 255507 (species)

SI-ID 127541

LMG 21996, CCUG 48482, CIP 108697, DSM 17680, CECT 7203

Special Collections

Section

Arcobacter cibarius KH-2 is a microaerophile, Gram-negative, rod-shaped bacterium that was isolated from skin of broiler carcass.

Gram-negative
rod-shaped
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Arcobacteraceae*
	Genus	*Arcobacter*
	Species	**Arcobacter cibarius**
	Full Scientific Name (LPSN)	Arcobacter cibarius Houf et al. 2005

Synonym

Aliarcobacter cibarius

Information on morphological and physiological properties Morphology

[Ref.: #23169]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %94.81

[Ref.: #23169]	Cell length	1.5 µm

[Ref.: #23169]	Cell width	0.5 µm

[Ref.: #23169]	Cell shape	rod-shaped

[Ref.: #23169]	Type of hemolysis	gamma
[Ref.: #23169]	Colony size	2 mm
[Ref.: #23169]	Colony color	whitish
[Ref.: #23169]	Incubation period	3 days
[Ref.: #23169]	Cultivation medium used	blood agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7122]

Culture medium

COLUMBIA BLOOD AGAR (DSMZ Medium 429)

[Ref.: #7122]

Culture medium growth

[Ref.: #7122]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7122]

Culture medium composition

expand / minimize

[Ref.: #23169]

Culture medium

blood agar

[Ref.: #23169]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #7122]		growth	28-37 °C
[Ref.: #23169]		growth	18-22 °C
[Ref.: #23169]	no	growth	42 °C
[Ref.: #58184]		growth	28-37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7122]	Oxygen tolerance	microaerophile
[Ref.: #58184]	Oxygen tolerance	microaerophile

[Ref.: #23169]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %94.061

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68373]	acetate ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	citrate ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	D-glucose ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	hippurate ChEBI	-	hydrolysis	* from API CAM
[Ref.: #68373]	malate ChEBI	-	assimilation	* from API CAM
[Ref.: #23169]	nitrate ChEBI	-	reduction
[Ref.: #68373]	nitrate ChEBI	+	reduction	* from API CAM
[Ref.: #68373]	propionate ChEBI	+	assimilation	* from API CAM
[Ref.: #23169]	selenite ChEBI	-	reduction
[Ref.: #68373]	succinate ChEBI	-	assimilation	* from API CAM
[Ref.: #23169]	triphenyltetrazolium chloride ChEBI	-	reduction
[Ref.: #68373]	triphenyltetrazolium chloride ChEBI	-	reduction	* from API CAM
[Ref.: #68373]	urea ChEBI	-	hydrolysis	* from API CAM
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #68373]	cefazolin ChEBI	yes	224	µg	* from API CAM
[Ref.: #68373]	erythromycin ChEBI	yes	14	µg	* from API CAM
[Ref.: #68373]	nalidixic acid ChEBI	yes	84	µg	* from API CAM

	Metabolite production	Metabolite	Production
[Ref.: #68373]		hydrogen sulfide ChEBI	no	* from API CAM

	Enzyme	Enzyme activity	EC number
[Ref.: #23169]	alkaline phosphatase	-	3.1.3.1
[Ref.: #68373]	alkaline phosphatase	+	3.1.3.1	* from API CAM
[Ref.: #23169]	catalase	+/-	1.11.1.6
[Ref.: #68373]	catalase	+	1.11.1.6	* from API CAM
[Ref.: #23169]	cytochrome oxidase	+	1.9.3.1
[Ref.: #23169]	DNase	-
[Ref.: #68373]	esterase	-		* from API CAM
[Ref.: #68373]	gamma-glutamyltransferase	-	2.3.2.2	* from API CAM
[Ref.: #23169]	hippurate hydrolase	-	3.5.1.32
[Ref.: #68373]	L-arginine arylamidase	-		* from API CAM
[Ref.: #68373]	L-aspartate arylamidase	-	3.4.11.21	* from API CAM
[Ref.: #68373]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API CAM
[Ref.: #23169]	urease	-	3.5.1.5
[Ref.: #68373]	urease	-	3.5.1.5	* from API CAM
	Only first 10 entries are displayed. Click here to see all.

API® CAM:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Reduction of nitrateNIT	EsteraseEST	Hippuric acidHIP	gamma-Glutamyl transferaseGGT	Reduction of Triphenyl tetrazolium chlorideTTC	Pyrrolidonyl arylamidasePYRA	L-arginine arylamidaseArgA	L-aspartic acid arylamidaseAspA	Alkaline phosphatasePAL	H2S productionH2S	Assimilation of D-glucoseGLU	Assimilation of succinateSUT	Growth inhibitionNAL	Growth inhibitionCFZ	Assimilation of acetateACE	Assimilation of propionic acidPROP	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Erythromycin resistance (+) sensitivity (-)ERO	CatalaseCAT
[Ref.: #7122]	3750	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7122]	Sample type/isolated from	skin of broiler carcass
[Ref.: #7122]	Geographic location (country and/or sea, region)	Flanders
[Ref.: #7122]	Country	Belgium
[Ref.: #7122]	Country ISO 3 Code	BEL
[Ref.: #7122]	Continent	Europe

[Ref.: #58184]	Sample type/isolated from	Broiler skin
[Ref.: #58184]	Sampling date	2002
[Ref.: #58184]	Geographic location (country and/or sea, region)	Gent
[Ref.: #58184]	Country	Belgium
[Ref.: #58184]	Country ISO 3 Code	BEL
[Ref.: #58184]	Continent	Europe

[Ref.: #23169]	Sampling date	2002
* marker position based on {}

Isolation sources categories

#Host	#Birds	#Chicken
#Host	#Other	#Decomposing animal
#Host Body-Site	#Organ	#Skin, Nail, Hair

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7122]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7122]	Arcobacter cibarius 16S rRNA gene, type strain LMG 21996T	AJ607391	1460	GenBank ENA	255507 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aliarcobacter cibarius LMG 21996	GCA_013372265	complete	GenBank ENA	255507 tax ID	*
[Ref.: #66792]	Aliarcobacter cibarius DSM 17680	GCA_005818875	contig	GenBank ENA	255507 tax ID	*
[Ref.: #66792]	Aliarcobacter cibarius LMG 21996	GCA_000522465	contig	GenBank ENA	1442598 tax ID	*
[Ref.: #66792]	Arcobacter cibarius LMG 21996	1442598.4	wgs	PATRIC	1442598 tax ID	*
[Ref.: #66792]	Arcobacter cibarius strain DSM 17680	255507.9	wgs	PATRIC	255507 tax ID	*
[Ref.: #66792]	Arcobacter cibarius strain LMG 21996	255507.13	complete	PATRIC	255507 tax ID	*

[Ref.: #23169]

GC-content

26.8-27.3 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aliarcobacter cibarius LMG 21996 NCBI: GCA_013372265.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	94.81	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	67.159	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	74.613	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	94.061	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	87.46	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	66.747	no

Availability in culture collections External links

[Ref.: #7122]

Culture collection no.

DSM 17680, CCUG 48482, LMG 21996, CIP 108697, CECT 7203

[Ref.: #71743]

SI-ID 127541

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Arcobacter cibarius Strain LMG21996T, Isolated from Broiler Carcasses.	Adam Z, Whiteduck-Leveillee K, Cloutier M, Chen W, Lewis CT, Levesque CA, Topp E, Lapen DR, Tambong JT, Talbot G, Khan IU	Genome Announc	10.1128/genomeA.00034-14	2014	*
Phylogeny	Arcobacter cibarius sp. nov., isolated from broiler carcasses.	Houf K, On SLW, Coenye T, Mast J, Van Hoof J, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.63103-0	2005	*

References

#7122

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17680

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23169

Kurt Houf, Stephen L. W. On, Tom Coenye, Jan Mast, Jan Van Hoof, Peter Vandamme: Arcobacter cibarius sp. nov., isolated from broiler carcasses. IJSEM 55: 713 - 717 2005 ( DOI 10.1099/ijs.0.63103-0 , PubMed 15774649 )

#58184 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48482

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68373

Automatically annotated from API CAM .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71743

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID127541.1 )

* These data were automatically processed and therefore are not curated

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Aliarcobacter cibarius LMG 21996

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