Name: Blautia coccoides CLC-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 18067

Type strain:

Species: Blautia coccoides

Strain Designation: CLC-1

Culture col. no.: DSM 935, ATCC 29236, NCTC 11035, JCM 1395, BCRC 14467, CCM 6064

Strain history: C. Kaneuchi CLC-1.

NCBI tax ID(s): 1532 (species)

Other strains from Blautia coccoides

B. coccoides PG-424-CC-9, DSM 29138

Section

Blautia coccoides CLC-1 is an anaerobe, mesophilic bacterium that was isolated from mouse faeces.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Blautia*
	Species	**Blautia coccoides**
	Full Scientific Name (PNU)	Blautia coccoides (Kaneuchi et al. 1976) Liu et al. 2008

Synonym

Clostridium coccoides

Information on culture and growth conditions Culture and growth conditions

[Ref.: #473]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #473]

Culture medium growth

[Ref.: #473]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #473]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #473]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #473]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #473]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #473]	Sample type/isolated from	mouse faeces

[Ref.: #67770]	Sample type/isolated from	Mouse feces
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB571656 (>99% sequence identity) for Blautia from Microbeatlas

Aquatic Samples	130
Soil Samples	27
Animal Samples	4973
Plant Samples	5
Total Samples	5135

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #473]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Blautia coccoides gene for 16S ribosomal RNA, partial sequence, strain: JCM 1395	AB571656	1493	ENA	1532 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Blautia coccoides DSM 935	GCA_004340925	scaffold	GenBank	1532 tax ID
[Ref.: #67770]	Blautia coccoides NCTC11035	GCA_900461125	contig	GenBank	1532 tax ID
[Ref.: #66792]	Blautia coccoides strain DSM 935	1532.16	wgs	PATRIC	1532 tax ID	*
[Ref.: #66792]	Blautia coccoides strain NCTC11035	1532.9	wgs	PATRIC	1532 tax ID	*
[Ref.: #66792]	Blautia coccoides NCTC 11035	2808606725	draft	JGI IMG/M	1532 tax ID	*
[Ref.: #66792]	Blautia coccoides DSM 935	2799112274	draft	JGI IMG/M	1532 tax ID	*

[Ref.: #473]	GC-content	44.3 mol%
[Ref.: #67770]	GC-content	44.3 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #473]

Culture collection no.

DSM 935, ATCC 29236, NCTC 11035, JCM 1395, BCRC 14467, CCM 6064

[Ref.: #20218]

Associated Passport(s) in StrainInfo

510059, 106587, 106589

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Blautia faecicola sp. nov., isolated from faeces from a healthy human.	Kim JS, Park JE, Lee KC, Choi SH, Oh BS, Yu SY, Eom MK, Kang SW, Han KI, Suh MK, Lee DH, Yoon H, Kim BY, Yang SJ, Lee JH, Lee JS, Park SH	Int J Syst Evol Microbiol	10.1099/ijsem.0.004015	2020	*
Pathogenicity	Comprehensive evaluation of the bactericidal activities of free bile acids in the large intestine of humans and rodents.	Watanabe M, Fukiya S, Yokota A	J Lipid Res	10.1194/jlr.M075143	2017	*
Pathogenicity	Effect of oligosaccharides on the adhesion of gut bacteria to human HT-29 cells.	Altamimi M, Abdelhay O, Rastall RA	Anaerobe	10.1016/j.anaerobe.2016.03.010	2016	*
Phylogeny	Isolation and characterization of two new homoacetogenic hydrogen-utilizing bacteria from the human intestinal tract that are closely related to Clostridium coccoides.	Kamlage B, Gruhl B, Blaut M	Appl Environ Microbiol	10.1128/aem.63.5.1732-1738.1997	1997	*

References

#473	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 935

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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