Name: Caldicellulosiruptor saccharolyticus Tp 8T.6.3.3.1.
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 18025

Type strain:

Species: Caldicellulosiruptor saccharolyticus

Strain Designation: Tp 8T.6.3.3.1.

Culture col. no.: DSM 8903, ATCC 43494

Strain history: <- F. A. Rainey; Tp 8T.6.3.3.1. (Caldocellum saccharolyticum) <- H. W. Morgan <- K. R. Sharrock and C. H. Sissons {1983}

NCBI tax ID(s): 351627 (strain), 44001 (species)

SI-ID 47023

ATCC 43494, DSM 8903

Section

Caldicellulosiruptor saccharolyticus Tp 8T.6.3.3.1. is an anaerobe, spore-forming, thermophilic bacterium that was isolated from thermal spring.

Gram-positive
spore-forming
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Syntrophomonadaceae*
	Genus	*Caldicellulosiruptor*
	Species	**Caldicellulosiruptor saccharolyticus**
	Full Scientific Name (LPSN)	Caldicellulosiruptor saccharolyticus Rainey et al. 1995

Synonym

"Caldocellum saccharolyticum"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3437]

Culture medium

CALDICELLULOSIRUPTOR MEDIUM (DSMZ Medium 640)

[Ref.: #3437]

Culture medium growth

[Ref.: #3437]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3437]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3437]			growth	65 °C

[Ref.: #3437]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %100

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3437]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.999

[Ref.: #69481]

Ability of spore formation

yes Confidence in %92

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3437]	Sample type/isolated from	thermal spring
[Ref.: #3437]	Geographic location (country and/or sea, region)	Taupo-Rotorua
[Ref.: #3437]	Country	New Zealand
[Ref.: #3437]	Country ISO 3 Code	NZL
[Ref.: #3437]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence NR_074845 (>99% sequence identity) for Caldicellulosiruptor saccharolyticus from Microbeatlas

Aquatic Samples	3
Soil Samples	1
Animal Samples
Plant Samples
Total Samples	4

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3437]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3437]	Caldicellulosiruptor saccharolyticus strain DSM 8903 16S ribosomal RNA, partial sequence	NR_074845	1537	GenBank	44001 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caldicellulosiruptor saccharolyticus DSM 8903	GCA_000016545	complete	GenBank	351627 tax ID	*
[Ref.: #66792]	Caldicellulosiruptor saccharolyticus DSM 8903	351627.8	complete	PATRIC	351627 tax ID	*
[Ref.: #66792]	Caldicellulosiruptor saccharolyticus DSM 8903	640427106	complete	JGI IMG/M	351627 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Caldicellulosiruptor saccharolyticus DSM 8903 DSM 8903 NCBI: GCA_000016545.1
[Ref.: #69481]	spore-forming	yes	92	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Caldicellulosiruptor saccharolyticus DSM 8903 DSM 8903 NCBI: GCA_000016545.1
[Ref.: #69480]	motile	yes	85.203	no
[Ref.: #69480]	flagellated	no	83.591	no
[Ref.: #69480]	gram-positive	yes	81.288	no
[Ref.: #69480]	anaerobic	yes	99.124	yes
[Ref.: #69480]	halophile	no	97.057	no
[Ref.: #69480]	spore-forming	no	61.997	no
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-util	yes	88.44	no
[Ref.: #69480]	aerobic	no	98.003	no
[Ref.: #69480]	glucose-ferment	no	51.608	no

Availability in culture collections External links

[Ref.: #3437]

Culture collection no.

DSM 8903, ATCC 43494

[Ref.: #87014]

SI-ID 47023

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Biotechnology	Single-step ethanol production from lignocellulose using novel extremely thermophilic bacteria.	Svetlitchnyi VA, Kensch O, Falkenhan DA, Korseska SG, Lippert N, Prinz M, Sassi J, Schickor A, Curvers S	Biotechnol Biofuels	10.1186/1754-6834-6-31	2013	*
Phylogeny	Caldicellulosiruptor changbaiensis sp. nov., a cellulolytic and hydrogen-producing bacterium from a hot spring.	Bing W, Wang H, Zheng B, Zhang F, Zhu G, Feng Y, Zhang Z	Int J Syst Evol Microbiol	10.1099/ijs.0.065441-0	2014	*
Metabolism	An extremely thermophilic anaerobic bacterium Caldicellulosiruptor sp. F32 exhibits distinctive properties in growth and xylanases during xylan hydrolysis.	Ying Y, Meng D, Chen X, Li F	Enzyme Microb Technol	10.1016/j.enzmictec.2013.04.004	2013	*
Metabolism	Consolidated bioprocessing of untreated switchgrass to hydrogen by the extreme thermophile Caldicellulosiruptor saccharolyticus DSM 8903.	Talluri S, Raj SM, Christopher LP	Bioresour Technol	10.1016/j.biortech.2013.04.005	2013	*
Enzymology	Characterization of a thermophilic L-rhamnose isomerase from Caldicellulosiruptor saccharolyticus ATCC 43494.	Lin CJ, Tseng WC, Fang TY	J Agric Food Chem	10.1021/jf201428b	2011	*
Enzymology	Enzymatic properties of recombinant kojibiose phosphorylase from Caldicellulosiruptor saccharolyticus ATCC43494.	Yamamoto T, Nishio-Kosaka M, Izawa S, Aga H, Nishimoto T, Chaen H, Fukuda S	Biosci Biotechnol Biochem	10.1271/bbb.110116	2011	*
Metabolism	Stable coexistence of two Caldicellulosiruptor species in a de novo constructed hydrogen-producing co-culture.	Zeidan AA, Radstrom P, van Niel EW	Microb Cell Fact	10.1186/1475-2859-9-102	2010	*
Enzymology	Characterization of a recombinant beta-glucosidase from the thermophilic bacterium Caldicellulosiruptor saccharolyticus.	Hong MR, Kim YS, Park CS, Lee JK, Kim YS, Oh DK	J Biosci Bioeng	10.1016/j.jbiosc.2009.02.014	2009	*
Metabolism	Efficient degradation of lignocellulosic plant biomass, without pretreatment, by the thermophilic anaerobe "Anaerocellum thermophilum" DSM 6725.	Yang SJ, Kataeva I, Hamilton-Brehm SD, Engle NL, Tschaplinski TJ, Doeppke C, Davis M, Westpheling J, Adams MW	Appl Environ Microbiol	10.1128/AEM.00236-09	2009	*
Genetics	Genome sequence of the anaerobic, thermophilic, and cellulolytic bacterium "Anaerocellum thermophilum" DSM 6725.	Kataeva IA, Yang SJ, Dam P, Poole FL 2nd, Yin Y, Zhou F, Chou WC, Xu Y, Goodwin L, Sims DR, Detter JC, Hauser LJ, Westpheling J, Adams MW	J Bacteriol	10.1128/JB.00256-09	2009	*
	Adapted laboratory evolution of Thermotoga sp. strain RQ7 under carbon starvation.	Gautam J, Xu H, Hu J, Pennacchio C, Lipzen A, Martin J, Xu Z	BMC Res Notes	10.1186/s13104-022-05982-9	2022	*
	Biochemical and Molecular Dynamics Study of a Novel GH 43 alpha-l-Arabinofuranosidase/beta-Xylosidase From Caldicellulosiruptor saccharolyticus DSM8903.	Saleh MA, Mahmud S, Albogami S, El-Shehawi AM, Paul GK, Islam S, Dutta AK, Uddin MS, Zaman S	Front Bioeng Biotechnol	10.3389/fbioe.2022.810542	2022	*
	Novel monosaccharide fermentation products in Caldicellulosiruptor saccharolyticus identified using NMR spectroscopy.	Isern NG, Xue J, Rao JV, Cort JR, Ahring BK	Biotechnol Biofuels	10.1186/1754-6834-6-47	2013	*

References

#3437

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8903

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87014

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47023.1 )

* These data were automatically processed and therefore are not curated

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Caldicellulosiruptor saccharolyticus DSM 8903 DSM 8903

Caldicellulosiruptor saccharolyticus DSM 8903 DSM 8903

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