Caldicellulosiruptor saccharolyticus (DSM 8903, ATCC 43494, Tp 8T.6.3.3.1.)

Name: Caldicellulosiruptor saccharolyticus (DSM 8903, ATCC 43494, Tp 8T.6.3.3.1.)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 18025

Type strain

Strain Designation Tp 8T.6.3.3.1.

Culture col. no. DSM 8903 ATCC 43494 Tp 8T.6.3.3.1.

NCBI tax ID(s) 351627 44001

Special Collections DSMZ

History DSMZ <- F. A. Rainey; Tp 8T.6.3.3.1. (Caldocellum saccharolyticum) <- H. W. Morgan <- K. R. Sharrock and C. H. Sissons {1983}

Links

Caldicellulosiruptor saccharolyticus Tp 8T.6.3.3.1. is an anaerobe bacterium that was isolated from thermal spring.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 47023

ATCC 43494,DSM 8903

@ref 20215

Last LPSN update 2026-05-29 08:29:09

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Caldicellulosiruptorales

Family Caldicellulosiruptoraceae

Genus Caldicellulosiruptor

Species Caldicellulosiruptor saccharolyticus

Full scientific name Caldicellulosiruptor saccharolyticus Rainey et al. 1995

Synonyms (1)

"Caldocellum saccharolyticum"

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
3437	CALDICELLULOSIRUPTOR MEDIUM (DSMZ Medium 640)		Medium recipe at MediaDive	Name: CALDICELLULOSIRUPTOR MEDIUM (DSMZ Medium 640) Composition: Trypticase peptone 2.0 g/l K2HPO4 1.5 g/l Cellobiose 1.0 g/l Yeast extract 1.0 g/l NH4Cl 0.9 g/l NaCl 0.9 g/l L-Cysteine HCl x H2O 0.75 g/l KH2PO4 0.75 g/l MgCl2 x 6 H2O 0.4 g/l HCl 0.0025 g/l FeCl3 x 6 H2O 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l Sodium resazurin 0.0005 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
3437	positive	growth	65

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
3437	anaerobe
125438	anaerobe	96.925
125439	facultative anaerobe	96.748

Spore formation

@ref	Spore formation	Confidence
125439		96.049

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
3437	thermal spring	Taupo-Rotorua	New Zealand	NZL	Australia and Oceania

Taxonmaps

69479

Global distribution of 16S sequence NR_074845 (>99% sequence identity) for Caldicellulosiruptor saccharolyticus from Microbeatlas

Aquatic Samples	3
Soil Samples	1
Animal Samples	0
Plant Samples	0
Total Samples	4

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3437	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1654v1 assembly for Caldicellulosiruptor saccharolyticus DSM 8903	complete	GCA_000016545	351627.8	640427106	351627	99.45

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
3437	Caldicellulosiruptor saccharolyticus strain DSM 8903 16S ribosomal RNA, partial sequence	NR_074845	1537		44001

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1654v1 assembly for Caldicellulosiruptor saccharolyticus DSM 8903
BV-BRC: 351627.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	96.75	no
125439	gram_stain	BacteriaNetⓘ	positive	41.27	no
125439	motility	BacteriaNetⓘ	yes	82.88	no
125439	spore_formation	BacteriaNetⓘ	yes	96.05	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Caldicellulosiruptor saccharolyticus DSM 8903 DSM 8903
NCBI: GCA_000016545.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	72.31	no
125438	anaerobic	anaerobicⓘ	yes	96.93	yes
125438	aerobic	aerobicⓘ	no	97.35	no
125438	spore-forming	spore-formingⓘ	no	61.26	no
125438	thermophilic	thermophileⓘ	yes	83.25	yes
125438	flagellated	motile2+ⓘ	yes	73.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	A novel beta-galactosidase from anaerobic thermophilic Caldicellulosiruptor saccharolyticus DSM 8903 with high potential for lactulose production.	Baramee S, Siriatcharanon AK, Waeonukul R, Pason P, Tachaapaikoon C, Ratanakhanokchai K.	J Sci Food Agric	10.1002/jsfa.14389	2025
	Structural studies of beta-glucosidase from the thermophilic bacterium Caldicellulosiruptor saccharolyticus.	Sotiropoulou AI, Hatzinikolaou DG, Chrysina ED.	Acta Crystallogr D Struct Biol	10.1107/s2059798324009252	2024
	Functional Characterization of Endo- and Exo-Hydrolase Genes in Arabinan Degradation Gene Cluster of Bifidobacterium longum subsp. suis.	Kang Y, Choi CY, Kang J, Ju YR, Kim HB, Han NS, Kim TJ.	Int J Mol Sci	10.3390/ijms25063175	2024
Enzymology	A novel SfaNI-like restriction-modification system in Caldicellulosiruptor extents the genetic engineering toolbox for this genus.	Swinnen S, Zurek C, Kramer M, Heger RM, Domeyer JE, Ziegler J, Svetlitchnyi VA, Laufer A.	PLoS One	10.1371/journal.pone.0279562	2022
Genetics	Bacterial genome-encoded ParMs.	Ali S, Koh A, Popp D, Tanaka K, Kitaoku Y, Miyazaki N, Iwasaki K, Mitsuoka K, Robinson RC, Narita A.	J Biol Chem	10.1016/j.jbc.2025.110351	2025
	Structural and Catalytic Characterization of TsBGL, a beta-Glucosidase From Thermofilum sp. ex4484_79.	Chen A, Wang D, Ji R, Li J, Gu S, Tang R, Ji C.	Front Microbiol	10.3389/fmicb.2021.723678	2021
	Anaerobic Digestion of Agri-Food Wastes for Generating Biofuels.	Gong C, Singh A, Singh P, Singh A.	Indian J Microbiol	10.1007/s12088-021-00977-9	2021
	A non-linear model of hydrogen production by Caldicellulosiruptor saccharolyticus for diauxic-like consumption of lignocellulosic sugar mixtures.	Bjorkmalm J, Byrne E, van Niel EWJ, Willquist K.	Biotechnol Biofuels	10.1186/s13068-018-1171-3	2018
	Design and application of a lactulose biosensor.	Wu J, Jiang P, Chen W, Xiong D, Huang L, Jia J, Chen Y, Jin JM, Tang SY.	Sci Rep	10.1038/srep45994	2017
Metabolism	Genome Wide Re-Annotation of Caldicellulosiruptor saccharolyticus with New Insights into Genes Involved in Biomass Degradation and Hydrogen Production.	Chowdhary N, Selvaraj A, KrishnaKumaar L, Kumar GR.	PLoS One	10.1371/journal.pone.0133183	2015
	Expression of Heterologous Cellulases in Thermotoga sp. Strain RQ2.	Xu H, Han D, Xu Z.	Biomed Res Int	10.1155/2015/304523	2015
	Evidence of horizontal gene transfer by transposase gene analyses in Fervidobacterium species.	Cuecas A, Kanoksilapatham W, Gonzalez JM.	PLoS One	10.1371/journal.pone.0173961	2017
Enzymology	Biotransformation, Pharmacokinetics, and Pharmacological Activities of Ginsenoside Rd Against Multiple Diseases.	Li J, Huang Q, Yao Y, Ji P, Mingyao E, Chen J, Zhang Z, Qi H, Liu J, Chen Z, Zhao D, Zhou L, Li X.	Front Pharmacol	10.3389/fphar.2022.909363	2022
	DUDE-Seq: Fast, flexible, and robust denoising for targeted amplicon sequencing.	Lee B, Moon T, Yoon S, Weissman T.	PLoS One	10.1371/journal.pone.0181463	2017
Metabolism	Caldicellulosiruptor saccharolyticus transcriptomes reveal consequences of chemical pretreatment and genetic modification of lignocellulose.	Blumer-Schuette SE, Zurawski JV, Conway JM, Khatibi P, Lewis DL, Li Q, Chiang VL, Kelly RM.	Microb Biotechnol	10.1111/1751-7915.12494	2017
Metabolism	Rational modification of substrate binding site by structure-based engineering of a cellobiose 2-epimerase in Caldicellulosiruptor saccharolyticus.	Park AR, Kim JS, Jang SW, Park YG, Koo BS, Lee HC.	Microb Cell Fact	10.1186/s12934-017-0841-3	2017
	Synergistic production of 20(S)-protopanaxadiol from protopanaxadiol-type ginsenosides by beta-glycosidases from Dictyoglomus turgidum and Caldicellulosiruptor bescii.	Choi JH, Seo MJ, Shin KC, Lee KW, Oh DK.	AMB Express	10.1186/s13568-017-0524-9	2017
	Compound K Production from Red Ginseng Extract by beta-Glycosidase from Sulfolobus solfataricus Supplemented with alpha-L-Arabinofuranosidase from Caldicellulosiruptor saccharolyticus.	Shin KC, Choi HY, Seo MJ, Oh DK.	PLoS One	10.1371/journal.pone.0145876	2015
	Biosynthesis of value-added bioproducts from hemicellulose of biomass through microbial metabolic engineering.	Geng B, Jia X, Peng X, Han Y.	Metab Eng Commun	10.1016/j.mec.2022.e00211	2022
	Biochemical and Structural Characterization of Thermostable GH159 Glycoside Hydrolases Exhibiting alpha-L-Arabinofuranosidase Activity.	Baudrexl M, Fida T, Berk B, Schwarz WH, Zverlov VV, Groll M, Liebl W.	Front Mol Biosci	10.3389/fmolb.2022.907439	2022
Metabolism	Bioaugmentation enhances dark fermentative hydrogen production in cultures exposed to short-term temperature fluctuations.	Okonkwo O, Escudie R, Bernet N, Mangayil R, Lakaniemi AM, Trably E.	Appl Microbiol Biotechnol	10.1007/s00253-019-10203-8	2020
Biotechnology	Discovery and Biotechnological Exploitation of Glycoside-Phosphorylases.	Li A, Benkoulouche M, Ladeveze S, Durand J, Cioci G, Laville E, Potocki-Veronese G.	Int J Mol Sci	10.3390/ijms23063043	2022
Phylogeny	High phylogenetic diversity of glycosyl hydrolase family 10 and 11 xylanases in the sediment of Lake Dabusu in China.	Wang G, Huang X, Ng TB, Lin J, Ye XY.	PLoS One	10.1371/journal.pone.0112798	2014
Metabolism	A Novel Multifunctional Arabinofuranosidase/Endoxylanase/beta-Xylosidase GH43 Enzyme from Paenibacillus curdlanolyticus B-6 and Its Synergistic Action To Produce Arabinose and Xylose from Cereal Arabinoxylan.	Limsakul P, Phitsuwan P, Waeonukul R, Pason P, Tachaapaikoon C, Poomputsa K, Kosugi A, Ratanakhanokchai K.	Appl Environ Microbiol	10.1128/aem.01730-21	2021
Metabolism	Improvement of biogas production by bioaugmentation.	Kovacs KL, Acs N, Kovacs E, Wirth R, Rakhely G, Strang O, Herbel Z, Bagi Z.	Biomed Res Int	10.1155/2013/482653	2013
Metabolism	Novel non-phosphorylative pathway of pentose metabolism from bacteria.	Watanabe S, Fukumori F, Nishiwaki H, Sakurai Y, Tajima K, Watanabe Y.	Sci Rep	10.1038/s41598-018-36774-6	2019
	Lignocellulosic hydrogen production using dark fermentation by Clostridium lentocellum strain Cel10 newly isolated from Ailuropoda melanoleuca excrement.	Zhang L, Li Y, Liu X, Ren N, Ding J.	RSC Adv	10.1039/c9ra01158g	2019
Metabolism	A comprehensive and quantitative review of dark fermentative biohydrogen production.	Rittmann S, Herwig C.	Microb Cell Fact	10.1186/1475-2859-11-115	2012
Metabolism	S-layer homology domain proteins Csac_0678 and Csac_2722 are implicated in plant polysaccharide deconstruction by the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus.	Ozdemir I, Blumer-Schuette SE, Kelly RM.	Appl Environ Microbiol	10.1128/aem.07031-11	2012
	Human gut microbe co-cultures have greater potential than monocultures for food waste remediation to commodity chemicals.	Perisin MA, Sund CJ.	Sci Rep	10.1038/s41598-018-33733-z	2018
Genetics	Hydrogenomics of the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus.	van de Werken HJ, Verhaart MR, VanFossen AL, Willquist K, Lewis DL, Nichols JD, Goorissen HP, Mongodin EF, Nelson KE, van Niel EW, Stams AJ, Ward DE, de Vos WM, van der Oost J, Kelly RM, Kengen SW.	Appl Environ Microbiol	10.1128/aem.00968-08	2008
Enzymology	Novel phages of healthy skin metaviromes from South Africa.	van Zyl LJ, Abrahams Y, Stander EA, Kirby-McCollough B, Jourdain R, Clavaud C, Breton L, Trindade M.	Sci Rep	10.1038/s41598-018-30705-1	2018
	Data from computational analysis of the peptide linkers in the MocR bacterial transcriptional regulators.	Angelaccio S, Milano T, Tramonti A, Di Salvo ML, Contestabile R, Pascarella S.	Data Brief	10.1016/j.dib.2016.08.064	2016
Metabolism	Carbohydrate utilization patterns for the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus reveal broad growth substrate preferences.	Vanfossen AL, Verhaart MR, Kengen SM, Kelly RM.	Appl Environ Microbiol	10.1128/aem.01959-09	2009
Metabolism	Natural transformation of Thermotoga sp. strain RQ7.	Han D, Xu H, Puranik R, Xu Z.	BMC Biotechnol	10.1186/1472-6750-14-39	2014
	Biofilm formation by designed co-cultures of Caldicellulosiruptor species as a means to improve hydrogen productivity.	Pawar SS, Vongkumpeang T, Grey C, van Niel EW.	Biotechnol Biofuels	10.1186/s13068-015-0201-7	2015
Metabolism	Reassessment of hydrogen tolerance in Caldicellulosiruptor saccharolyticus.	Willquist K, Pawar SS, Van Niel EW.	Microb Cell Fact	10.1186/1475-2859-10-111	2011
Genetics	Insights into plant biomass conversion from the genome of the anaerobic thermophilic bacterium Caldicellulosiruptor bescii DSM 6725.	Dam P, Kataeva I, Yang SJ, Zhou F, Yin Y, Chou W, Poole FL, Westpheling J, Hettich R, Giannone R, Lewis DL, Kelly R, Gilbert HJ, Henrissat B, Xu Y, Adams MW, Adams MW.	Nucleic Acids Res	10.1093/nar/gkq1281	2011
Metabolism	The Sporomusa type Nfn is a novel type of electron-bifurcating transhydrogenase that links the redox pools in acetogenic bacteria.	Kremp F, Roth J, Muller V.	Sci Rep	10.1038/s41598-020-71038-2	2020
Metabolism	Part I: characterization of the extracellular proteome of the extreme thermophile Caldicellulosiruptor saccharolyticus by GeLC-MS2.	Andrews G, Lewis D, Notey J, Kelly R, Muddiman D.	Anal Bioanal Chem	10.1007/s00216-010-3955-6	2010
Metabolism	2-O-alpha-D-glucosylglycerol phosphorylase from Bacillus selenitireducens MLS10 possessing hydrolytic activity on beta-D-glucose 1-phosphate.	Nihira T, Saito Y, Ohtsubo K, Nakai H, Kitaoka M.	PLoS One	10.1371/journal.pone.0086548	2014
Metabolism	Genomic evaluation of Thermoanaerobacter spp. for the construction of designer co-cultures to improve lignocellulosic biofuel production.	Verbeke TJ, Zhang X, Henrissat B, Spicer V, Rydzak T, Krokhin OV, Fristensky B, Levin DB, Sparling R.	PLoS One	10.1371/journal.pone.0059362	2013
Metabolism	Insights into the genome structure of four acetogenic bacteria with specific reference to the Wood-Ljungdahl pathway.	Esposito A, Tamburini S, Triboli L, Ambrosino L, Chiusano ML, Jousson O.	Microbiologyopen	10.1002/mbo3.938	2019
	Efficient hydrogen production from the lignocellulosic energy crop Miscanthus by the extreme thermophilic bacteria Caldicellulosiruptor saccharolyticus and Thermotoga neapolitana.	de Vrije T, Bakker RR, Budde MA, Lai MH, Mars AE, Claassen PA.	Biotechnol Biofuels	10.1186/1754-6834-2-12	2009
Metabolism	Physiological roles of pyruvate ferredoxin oxidoreductase and pyruvate formate-lyase in Thermoanaerobacterium saccharolyticum JW/SL-YS485.	Zhou J, Olson DG, Lanahan AA, Tian L, Murphy SJ, Lo J, Lynd LR.	Biotechnol Biofuels	10.1186/s13068-015-0304-1	2015
Metabolism	Eubacterial SpoVG homologs constitute a new family of site-specific DNA-binding proteins.	Jutras BL, Chenail AM, Rowland CL, Carroll D, Miller MC, Bykowski T, Stevenson B.	PLoS One	10.1371/journal.pone.0066683	2013
	Gene conservation among endospore-forming bacteria reveals additional sporulation genes in Bacillus subtilis.	Traag BA, Pugliese A, Eisen JA, Losick R.	J Bacteriol	10.1128/jb.01778-12	2013
	Multiple amino acid sequence alignment nitrogenase component 1: insights into phylogenetics and structure-function relationships.	Howard JB, Kechris KJ, Rees DC, Glazer AN.	PLoS One	10.1371/journal.pone.0072751	2013
	An alternative path for the evolution of biological nitrogen fixation.	Boyd ES, Hamilton TL, Peters JW.	Front Microbiol	10.3389/fmicb.2011.00205	2011
	Fermentation of Mannitol Extracts From Brown Macro Algae by Thermophilic Clostridia.	Chades T, Scully SM, Ingvadottir EM, Orlygsson J.	Front Microbiol	10.3389/fmicb.2018.01931	2018
Metabolism	Protein thiocarboxylate-dependent methionine biosynthesis in Wolinella succinogenes.	Krishnamoorthy K, Begley TP.	J Am Chem Soc	10.1021/ja107424t	2011
	Discovery of a novel (R)-selective bacterial hydroxynitrile lyase from Acidobacterium capsulatum.	Wiedner R, Gruber-Khadjawi M, Schwab H, Steiner K.	Comput Struct Biotechnol J	10.1016/j.csbj.2014.07.002	2014
Metabolism	Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery.	Itoh T, Hibi T, Suzuki F, Sugimoto I, Fujiwara A, Inaka K, Tanaka H, Ohta K, Fujii Y, Taketo A, Kimoto H.	PLoS One	10.1371/journal.pone.0167310	2016
Genetics	Transcriptional Regulation of Plant Biomass Degradation and Carbohydrate Utilization Genes in the Extreme Thermophile Caldicellulosiruptor bescii.	Rodionov DA, Rodionova IA, Rodionov VA, Arzamasov AA, Zhang K, Rubinstein GM, Tanwee TNN, Bing RG, Crosby JR, Nookaew I, Basen M, Brown SD, Wilson CM, Klingeman DM, Poole FL, Zhang Y, Kelly RM, Adams MWW.	mSystems	10.1128/msystems.01345-20	2021
Metabolism	Carbon source preference in chemosynthetic hot spring communities.	Urschel MR, Kubo MD, Hoehler TM, Peters JW, Boyd ES.	Appl Environ Microbiol	10.1128/aem.00511-15	2015
	Identification of a novel ABC transporter required for desiccation tolerance, and biofilm formation in Rhizobium leguminosarum bv. viciae 3841.	Vanderlinde EM, Harrison JJ, Muszynski A, Carlson RW, Turner RJ, Yost CK.	FEMS Microbiol Ecol	10.1111/j.1574-6941.2009.00824.x	2010
Metabolism	Linking genome content to biofuel production yields: a meta-analysis of major catabolic pathways among select H2 and ethanol-producing bacteria.	Carere CR, Rydzak T, Verbeke TJ, Cicek N, Levin DB, Sparling R.	BMC Microbiol	10.1186/1471-2180-12-295	2012
Metabolism	Identification of the [FeFe]-hydrogenase responsible for hydrogen generation in Thermoanaerobacterium saccharolyticum and demonstration of increased ethanol yield via hydrogenase knockout.	Shaw AJ, Hogsett DA, Lynd LR.	J Bacteriol	10.1128/jb.00497-09	2009
	Reduced use of phosphorus and water in sequential dark fermentation and anaerobic digestion of wheat straw and the application of ensiled steam-pretreated lucerne as a macronutrient provider in anaerobic digestion.	Byrne E, Kovacs K, van Niel EWJ, Willquist K, Svensson SE, Kreuger E.	Biotechnol Biofuels	10.1186/s13068-018-1280-z	2018
Metabolism	Evolutionary Adaptation of the Essential tRNA Methyltransferase TrmD to the Signaling Molecule 3',5'-cAMP in Bacteria.	Zhang Y, Agrebi R, Bellows LE, Collet JF, Kaever V, Grundling A.	J Biol Chem	10.1074/jbc.m116.758896	2017
	Natural competence in Thermoanaerobacter and Thermoanaerobacterium species.	Shaw AJ, Hogsett DA, Lynd LR.	Appl Environ Microbiol	10.1128/aem.00402-10	2010
Metabolism	Genome mining for ribosomally synthesized and post-translationally modified peptides (RiPPs) in anaerobic bacteria.	Letzel AC, Pidot SJ, Hertweck C.	BMC Genomics	10.1186/1471-2164-15-983	2014
Metabolism	Part II: defining and quantifying individual and co-cultured intracellular proteomes of two thermophilic microorganisms by GeLC-MS2 and spectral counting.	Andrews G, Lewis D, Notey J, Kelly R, Muddiman D.	Anal Bioanal Chem	10.1007/s00216-010-3929-8	2010
Metabolism	Biological systems discovery in silico: radical S-adenosylmethionine protein families and their target peptides for posttranslational modification.	Haft DH, Basu MK.	J Bacteriol	10.1128/jb.00040-11	2011
	The role of tetraether lipid composition in the adaptation of thermophilic archaea to acidity.	Boyd ES, Hamilton TL, Wang J, He L, Zhang CL.	Front Microbiol	10.3389/fmicb.2013.00062	2013
	Long-Term Oil Contamination Alters the Molecular Ecological Networks of Soil Microbial Functional Genes.	Liang Y, Zhao H, Deng Y, Zhou J, Li G, Sun B.	Front Microbiol	10.3389/fmicb.2016.00060	2016
Metabolism	Fermentative hydrogen production from agroindustrial lignocellulosic substrates.	Reginatto V, Antonio RV.	Braz J Microbiol	10.1590/s1517-838246220140111	2015
Metabolism	Molecular Evolution of the Oxygen-Binding Hemerythrin Domain.	Alvarez-Carreno C, Becerra A, Lazcano A.	PLoS One	10.1371/journal.pone.0157904	2016
Phylogeny	Being Aquifex aeolicus: Untangling a hyperthermophile's checkered past.	Eveleigh RJ, Meehan CJ, Archibald JM, Beiko RG.	Genome Biol Evol	10.1093/gbe/evt195	2013
Metabolism	Characterization of a novel bifunctional dihydropteroate synthase/dihydropteroate reductase enzyme from Helicobacter pylori.	Levin I, Mevarech M, Palfey BA.	J Bacteriol	10.1128/jb.01878-06	2007
	Characterization and structure of a Zn2+ and [2Fe-2S]-containing copper chaperone from Archaeoglobus fulgidus.	Sazinsky MH, LeMoine B, Orofino M, Davydov R, Bencze KZ, Stemmler TL, Hoffman BM, Arguello JM, Rosenzweig AC.	J Biol Chem	10.1074/jbc.m703311200	2007
Enzymology	Domain analysis of a modular alpha-L-Arabinofuranosidase with a unique carbohydrate binding strategy from the fiber-degrading bacterium Fibrobacter succinogenes S85.	Yoshida S, Hespen CW, Beverly RL, Mackie RI, Cann IK.	J Bacteriol	10.1128/jb.00503-10	2010
Metabolism	Glutamate 2,3-aminomutase: a new member of the radical SAM superfamily of enzymes.	Ruzicka FJ, Frey PA.	Biochim Biophys Acta	10.1016/j.bbapap.2006.11.008	2007
	Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform.	Schirmer M, Ijaz UZ, D'Amore R, Hall N, Sloan WT, Quince C.	Nucleic Acids Res	10.1093/nar/gku1341	2015
Genetics	Characterization of the central metabolic pathways in Thermoanaerobacter sp. strain X514 via isotopomer-assisted metabolite analysis.	Feng X, Mouttaki H, Lin L, Huang R, Wu B, Hemme CL, He Z, Zhang B, Hicks LM, Xu J, Zhou J, Tang YJ.	Appl Environ Microbiol	10.1128/aem.00715-09	2009
Genetics	A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling.	D'Amore R, Ijaz UZ, Schirmer M, Kenny JG, Gregory R, Darby AC, Shakya M, Podar M, Quince C, Hall N.	BMC Genomics	10.1186/s12864-015-2194-9	2016
Genetics	Information theoretic perspective on genome clustering.	Veluchamy A, Mehta P, Srividhya KV, Vikram H, Govind MK, Gupta R, Aziz Bin Dukhyil A, Abdullah Alharbi R, Abdullah Aloyuni S, Hassan MM, Krishnaswamy S.	Saudi J Biol Sci	10.1016/j.sjbs.2020.12.039	2021
	Carboxylic ester hydrolases from hyperthermophiles.	Levisson M, van der Oost J, Kengen SW.	Extremophiles	10.1007/s00792-009-0260-4	2009
Metabolism	Protein tyrosine O-glycosylation--a rather unexplored prokaryotic glycosylation system.	Zarschler K, Janesch B, Pabst M, Altmann F, Messner P, Schaffer C.	Glycobiology	10.1093/glycob/cwq035	2010
	Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms.	Nasir A, Naeem A, Khan MJ, Nicora HD, Caetano-Anolles G.	Genes (Basel)	10.3390/genes2040869	2011
Genetics	A genomic signature and the identification of new sporulation genes.	Abecasis AB, Serrano M, Alves R, Quintais L, Pereira-Leal JB, Henriques AO.	J Bacteriol	10.1128/jb.02110-12	2013
	L-rhamnose isomerase: a crucial enzyme for rhamnose catabolism and conversion of rare sugars.	Yoshida H, Izumori K, Yoshihara A.	Appl Microbiol Biotechnol	10.1007/s00253-024-13325-w	2024
Genetics	A novel thermotolerant L-rhamnose isomerase variant for biocatalytic conversion of D-allulose to D-allose.	Sharma S, Patel SN, Singh SP.	Appl Microbiol Biotechnol	10.1007/s00253-024-13074-w	2024
	Misprediction of Structural Disorder in Halophiles.	Pancsa R, Kovacs D, Tompa P.	Molecules	10.3390/molecules24030479	2019
Biotechnology	Single-step ethanol production from lignocellulose using novel extremely thermophilic bacteria.	Svetlitchnyi VA, Kensch O, Falkenhan DA, Korseska SG, Lippert N, Prinz M, Sassi J, Schickor A, Curvers S	Biotechnol Biofuels	10.1186/1754-6834-6-31	2013
	Adapted laboratory evolution of Thermotoga sp. strain RQ7 under carbon starvation.	Gautam J, Xu H, Hu J, Pennacchio C, Lipzen A, Martin J, Xu Z	BMC Res Notes	10.1186/s13104-022-05982-9	2022
	Biochemical and Molecular Dynamics Study of a Novel GH 43 alpha-l-Arabinofuranosidase/beta-Xylosidase From Caldicellulosiruptor saccharolyticus DSM8903.	Saleh MA, Mahmud S, Albogami S, El-Shehawi AM, Paul GK, Islam S, Dutta AK, Uddin MS, Zaman S	Front Bioeng Biotechnol	10.3389/fbioe.2022.810542	2022
Metabolism	An extremely thermophilic anaerobic bacterium Caldicellulosiruptor sp. F32 exhibits distinctive properties in growth and xylanases during xylan hydrolysis.	Ying Y, Meng D, Chen X, Li F	Enzyme Microb Technol	10.1016/j.enzmictec.2013.04.004	2013
Metabolism	Consolidated bioprocessing of untreated switchgrass to hydrogen by the extreme thermophile Caldicellulosiruptor saccharolyticus DSM 8903.	Talluri S, Raj SM, Christopher LP	Bioresour Technol	10.1016/j.biortech.2013.04.005	2013
	Novel monosaccharide fermentation products in Caldicellulosiruptor saccharolyticus identified using NMR spectroscopy.	Isern NG, Xue J, Rao JV, Cort JR, Ahring BK	Biotechnol Biofuels	10.1186/1754-6834-6-47	2013
Enzymology	Characterization of a thermophilic L-rhamnose isomerase from Caldicellulosiruptor saccharolyticus ATCC 43494.	Lin CJ, Tseng WC, Fang TY	J Agric Food Chem	10.1021/jf201428b	2011
Enzymology	Enzymatic properties of recombinant kojibiose phosphorylase from Caldicellulosiruptor saccharolyticus ATCC43494.	Yamamoto T, Nishio-Kosaka M, Izawa S, Aga H, Nishimoto T, Chaen H, Fukuda S	Biosci Biotechnol Biochem	10.1271/bbb.110116	2011
Metabolism	Stable coexistence of two Caldicellulosiruptor species in a de novo constructed hydrogen-producing co-culture.	Zeidan AA, Radstrom P, van Niel EW	Microb Cell Fact	10.1186/1475-2859-9-102	2010
Enzymology	Characterization of a recombinant beta-glucosidase from the thermophilic bacterium Caldicellulosiruptor saccharolyticus.	Hong MR, Kim YS, Park CS, Lee JK, Kim YS, Oh DK	J Biosci Bioeng	10.1016/j.jbiosc.2009.02.014	2009
Metabolism	Efficient degradation of lignocellulosic plant biomass, without pretreatment, by the thermophilic anaerobe "Anaerocellum thermophilum" DSM 6725.	Yang SJ, Kataeva I, Hamilton-Brehm SD, Engle NL, Tschaplinski TJ, Doeppke C, Davis M, Westpheling J, Adams MW	Appl Environ Microbiol	10.1128/AEM.00236-09	2009
Genetics	Genome sequence of the anaerobic, thermophilic, and cellulolytic bacterium "Anaerocellum thermophilum" DSM 6725.	Kataeva IA, Yang SJ, Dam P, Poole FL 2nd, Yin Y, Zhou F, Chou WC, Xu Y, Goodwin L, Sims DR, Detter JC, Hauser LJ, Westpheling J, Adams MW	J Bacteriol	10.1128/JB.00256-09	2009
Phylogeny	Caldicellulosiruptor changbaiensis sp. nov., a cellulolytic and hydrogen-producing bacterium from a hot spring.	Bing W, Wang H, Zheng B, Zhang F, Zhu G, Feng Y, Zhang Z	Int J Syst Evol Microbiol	10.1099/ijs.0.065441-0	2014

References

#3437	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8903
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Caldicellulosiruptor saccharolyticus (DSM 8903, ATCC 43494, Tp 8T.6.3.3.1.)

Name and taxonomic classification

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