Name: Sedimentibacter hongkongensis HKU2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 18009

Type strain:

Species: Sedimentibacter hongkongensis

Strain Designation: HKU2

Culture col. no.: DSM 16083, NBRC 110944

Strain history: <- P. C. Y. Woo, Queen Mary Hospital, University of Hong Kong, China; HKU2

NCBI tax ID(s): 178338 (species)

SI-ID 405308

DSM 16083

Section

Sedimentibacter hongkongensis HKU2 is an anaerobe, mesophilic human pathogen that was isolated from human blood of a 91-year-old patient with colonic carcinoma.

anaerobe
human pathogen
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Tissierellales*
	Family	"Sedimentibacteraceae"
	Genus	*Sedimentibacter*
	Species	**Sedimentibacter hongkongensis**
	Full Scientific Name (LPSN)	Sedimentibacter hongkongensis Woo et al. 2016

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6281]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #6281]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #6281]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6281]			growth	37 °C

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Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6281]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6281]	Sample type/isolated from	human blood of a 91-year-old patient with colonic carcinoma
[Ref.: #6281]	Country	Hong Kong
[Ref.: #6281]	Country ISO 3 Code	HKG
[Ref.: #6281]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host	#Human	-
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF433166 (>99% sequence identity) for Sedimentibacter hongkongensis subclade from Microbeatlas

Aquatic Samples	1057
Soil Samples	1451
Animal Samples	1414
Plant Samples	351
Total Samples	4273

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6281]	Pathogenicity (human)	yes, in single cases
[Ref.: #6281]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6281]	Sedimentibacter hongkongensis 16S ribosomal RNA gene, partial sequence	AF433166	1474	ENA	178338 tax ID

Availability in culture collections External links

[Ref.: #6281]

Culture collection no.

DSM 16083, NBRC 110944

[Ref.: #86996]

SI-ID 405308

References

#6281

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16083

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86996

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405308.1 )

* These data were automatically processed and therefore are not curated

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