Sedimentibacter hongkongensis (DSM 16083, NBRC 110944, HKU2)

Name: Sedimentibacter hongkongensis (DSM 16083, NBRC 110944, HKU2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 18009

Type strain

Strain Designation HKU2

Culture col. no. DSM 16083 NBRC 110944 HKU2

NCBI tax ID(s) 178338

Special Collections DSMZ

History <- P. C. Y. Woo, Queen Mary Hospital, University of Hong Kong, China; HKU2

Links

Sedimentibacter hongkongensis HKU2 is an anaerobe bacterium that was isolated from human blood of a 91-year-old patient with colonic carcinoma.

anaerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 405308

LMG 22122,NBRC 110944,DSM 16083

@ref 20215

Last LPSN update 2026-02-09 11:22:21

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Tissierellales

Family Sedimentibacteraceae

Genus Sedimentibacter

Species Sedimentibacter hongkongensis

Full scientific name Sedimentibacter hongkongensis Woo et al. 2016

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6281	CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
6281	positive	growth	37

Physiology and metabolism

Oxygen tolerance

6281

Oxygen toleranceanaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	-
#Host	#Human	-
#Host Body Product	#Fluids	#Blood

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
6281	human blood of a 91-year-old patient with colonic carcinoma	Hong Kong	HKG	Asia

Taxonmaps

69479

Global distribution of 16S sequence AF433166 (>99% sequence identity) for Sedimentibacter hongkongensis subclade from Microbeatlas

Aquatic Samples	1057
Soil Samples	1451
Animal Samples	1414
Plant Samples	351
Total Samples	4273

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
6281	yes, in single cases	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6281	Sedimentibacter hongkongensis 16S ribosomal RNA gene, partial sequence	AF433166	1474		178338

Genome-based predictions

Literature

References

#6281	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16083
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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