Acidaminobacter hydrogenoformans DSM 2784 is an anaerobe, Gram-negative, rod-shaped bacterium that was isolated from mud.
Gram-negative rod-shaped anaerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Bacillota |
| Class Clostridia |
| Order Eubacteriales |
| Family Clostridiaceae |
| Genus Acidaminobacter |
| Species Acidaminobacter hydrogenoformans |
| Full scientific name Acidaminobacter hydrogenoformans Stams and Hansen 1985 |
| @ref | Gram stain | Cell shape | |
|---|---|---|---|
| 120003 | negative | rod-shaped |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 39471 | MEDIUM 224 - for anaerobic bacteria TGV | Distilled water make up to (1000.000 ml);Glucose (10.000 g);Yeast extract (20.000 g);Resazurin (2.000 mg);Trypto casein soy broth (30.000 g);L-Cysteine (0.500 g);Hemin solution - M00149 (25.000 ml);Vitamins solution - M00850 (10.000 ml) | |||
| 1225 | ACIDAMINOBACTER MEDIUM (DSMZ Medium 292) | Medium recipe at MediaDive | Name: ACIDAMINOBACTER MEDIUM (DSMZ Medium 292) Composition: Na2SO4 2.99103 g/l NaHCO3 1.99402 g/l Glycine 1.49551 g/l NaCl 1.19641 g/l KCl 0.398804 g/l MgCl2 x 6 H2O 0.398804 g/l Na2S x 9 H2O 0.299103 g/l KH2PO4 0.199402 g/l Yeast extract 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water | ||
| 120003 | CIP Medium 402 | Medium recipe at CIP | |||
| 120003 | CIP Medium 20 | Medium recipe at CIP |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | cellulose degradation | 100 | 5 of 5 | ||
| 66794 | gluconeogenesis | 100 | 8 of 8 | ||
| 66794 | C4 and CAM-carbon fixation | 100 | 8 of 8 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | lactate fermentation | 100 | 4 of 4 | ||
| 66794 | aminopropanol phosphate biosynthesis | 100 | 2 of 2 | ||
| 66794 | lipoate biosynthesis | 100 | 5 of 5 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | threonine metabolism | 100 | 10 of 10 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | ||
| 66794 | biotin biosynthesis | 100 | 4 of 4 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 100 | 8 of 8 | ||
| 66794 | isoleucine metabolism | 100 | 8 of 8 | ||
| 66794 | palmitate biosynthesis | 95.45 | 21 of 22 | ||
| 66794 | pentose phosphate pathway | 90.91 | 10 of 11 | ||
| 66794 | glutamate and glutamine metabolism | 89.29 | 25 of 28 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | NAD metabolism | 88.89 | 16 of 18 | ||
| 66794 | valine metabolism | 88.89 | 8 of 9 | ||
| 66794 | citric acid cycle | 85.71 | 12 of 14 | ||
| 66794 | tetrahydrofolate metabolism | 85.71 | 12 of 14 | ||
| 66794 | reductive acetyl coenzyme A pathway | 85.71 | 6 of 7 | ||
| 66794 | purine metabolism | 85.11 | 80 of 94 | ||
| 66794 | urea cycle | 84.62 | 11 of 13 | ||
| 66794 | phenylalanine metabolism | 84.62 | 11 of 13 | ||
| 66794 | pyrimidine metabolism | 84.44 | 38 of 45 | ||
| 66794 | glycolysis | 82.35 | 14 of 17 | ||
| 66794 | Entner Doudoroff pathway | 80 | 8 of 10 | ||
| 66794 | glycine betaine biosynthesis | 80 | 4 of 5 | ||
| 66794 | hydrogen production | 80 | 4 of 5 | ||
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | ||
| 66794 | propionate fermentation | 80 | 8 of 10 | ||
| 66794 | photosynthesis | 78.57 | 11 of 14 | ||
| 66794 | molybdenum cofactor biosynthesis | 77.78 | 7 of 9 | ||
| 66794 | aspartate and asparagine metabolism | 77.78 | 7 of 9 | ||
| 66794 | alanine metabolism | 75.86 | 22 of 29 | ||
| 66794 | acetate fermentation | 75 | 3 of 4 | ||
| 66794 | butanoate fermentation | 75 | 3 of 4 | ||
| 66794 | sulfopterin metabolism | 75 | 3 of 4 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | arginine metabolism | 75 | 18 of 24 | ||
| 66794 | flavin biosynthesis | 73.33 | 11 of 15 | ||
| 66794 | histidine metabolism | 72.41 | 21 of 29 | ||
| 66794 | cysteine metabolism | 72.22 | 13 of 18 | ||
| 66794 | propanol degradation | 71.43 | 5 of 7 | ||
| 66794 | cardiolipin biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | ubiquinone biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | methionine metabolism | 69.23 | 18 of 26 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | ||
| 66794 | CO2 fixation in Crenarchaeota | 66.67 | 6 of 9 | ||
| 66794 | lysine metabolism | 66.67 | 28 of 42 | ||
| 66794 | cyanate degradation | 66.67 | 2 of 3 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | serine metabolism | 66.67 | 6 of 9 | ||
| 66794 | methane metabolism | 66.67 | 2 of 3 | ||
| 66794 | selenocysteine biosynthesis | 66.67 | 4 of 6 | ||
| 66794 | glycolate and glyoxylate degradation | 66.67 | 4 of 6 | ||
| 66794 | tryptophan metabolism | 63.16 | 24 of 38 | ||
| 66794 | leucine metabolism | 61.54 | 8 of 13 | ||
| 66794 | non-pathway related | 60.53 | 23 of 38 | ||
| 66794 | methylglyoxal degradation | 60 | 3 of 5 | ||
| 66794 | glycogen metabolism | 60 | 3 of 5 | ||
| 66794 | starch degradation | 60 | 6 of 10 | ||
| 66794 | factor 420 biosynthesis | 60 | 3 of 5 | ||
| 66794 | phenol degradation | 60 | 12 of 20 | ||
| 66794 | degradation of sugar alcohols | 56.25 | 9 of 16 | ||
| 66794 | degradation of sugar acids | 56 | 14 of 25 | ||
| 66794 | d-mannose degradation | 55.56 | 5 of 9 | ||
| 66794 | oxidative phosphorylation | 54.95 | 50 of 91 | ||
| 66794 | proline metabolism | 54.55 | 6 of 11 | ||
| 66794 | isoprenoid biosynthesis | 53.85 | 14 of 26 | ||
| 66794 | toluene degradation | 50 | 2 of 4 | ||
| 66794 | ethanol fermentation | 50 | 1 of 2 | ||
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | ||
| 66794 | cis-vaccenate biosynthesis | 50 | 1 of 2 | ||
| 66794 | CMP-KDO biosynthesis | 50 | 2 of 4 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 50 | 6 of 12 | ||
| 66794 | glycine metabolism | 50 | 5 of 10 | ||
| 66794 | vitamin E metabolism | 50 | 2 of 4 | ||
| 66794 | ribulose monophosphate pathway | 50 | 1 of 2 | ||
| 66794 | ketogluconate metabolism | 50 | 4 of 8 | ||
| 66794 | quinate degradation | 50 | 1 of 2 | ||
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | ||
| 66794 | lipid metabolism | 48.39 | 15 of 31 | ||
| 66794 | polyamine pathway | 47.83 | 11 of 23 | ||
| 66794 | vitamin B1 metabolism | 46.15 | 6 of 13 | ||
| 66794 | tyrosine metabolism | 42.86 | 6 of 14 | ||
| 66794 | degradation of pentoses | 42.86 | 12 of 28 | ||
| 66794 | vitamin B12 metabolism | 41.18 | 14 of 34 | ||
| 66794 | 3-chlorocatechol degradation | 40 | 2 of 5 | ||
| 66794 | ethylmalonyl-CoA pathway | 40 | 2 of 5 | ||
| 66794 | gallate degradation | 40 | 2 of 5 | ||
| 66794 | 3-phenylpropionate degradation | 40 | 6 of 15 | ||
| 66794 | 4-hydroxyphenylacetate degradation | 40 | 4 of 10 | ||
| 66794 | androgen and estrogen metabolism | 37.5 | 6 of 16 | ||
| 66794 | ascorbate metabolism | 36.36 | 8 of 22 | ||
| 66794 | d-xylose degradation | 36.36 | 4 of 11 | ||
| 66794 | metabolism of disaccharids | 36.36 | 4 of 11 | ||
| 66794 | vitamin B6 metabolism | 36.36 | 4 of 11 | ||
| 66794 | 4-hydroxymandelate degradation | 33.33 | 3 of 9 | ||
| 66794 | nitrate assimilation | 33.33 | 3 of 9 | ||
| 66794 | lipid A biosynthesis | 33.33 | 3 of 9 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | enterobactin biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 30.77 | 4 of 13 | ||
| 66794 | phenylpropanoid biosynthesis | 30.77 | 4 of 13 | ||
| 66794 | myo-inositol biosynthesis | 30 | 3 of 10 | ||
| 66794 | coenzyme M biosynthesis | 30 | 3 of 10 | ||
| 66794 | glutathione metabolism | 28.57 | 4 of 14 | ||
| 66794 | benzoyl-CoA degradation | 28.57 | 2 of 7 | ||
| 66794 | degradation of hexoses | 27.78 | 5 of 18 | ||
| 66794 | methanogenesis from CO2 | 25 | 3 of 12 | ||
| 66794 | cyclohexanol degradation | 25 | 1 of 4 | ||
| 66794 | dTDPLrhamnose biosynthesis | 25 | 2 of 8 | ||
| 66794 | sulfate reduction | 23.08 | 3 of 13 |
Global distribution of 16S sequence AF016691 (>99% sequence identity) for Acidaminobacter hydrogenoformans subclade from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | IMG-taxon 2599185234 annotated assembly for Acidaminobacter hydrogenoformans DSM 2784 | scaffold | 1120920 | 66.45 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 1225 | Acidaminobacter hydrogenoformans 16S ribosomal RNA gene, complete sequence | AF016691 | 1468 | 65403 |
| 1225 | GC-content (mol%)48.1 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | yes | 73.50 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 57.40 | no |
| 125439 | gram_stain | BacteriaNetⓘ | variable | 72.90 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | anaerobe | 92.60 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 55.06 | no |
| 125438 | anaerobic | anaerobicⓘ | yes | 73.94 | no |
| 125438 | aerobic | aerobicⓘ | no | 88.84 | yes |
| 125438 | spore-forming | spore-formingⓘ | yes | 56.69 | no |
| 125438 | thermophilic | thermophileⓘ | no | 85.06 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 75.15 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Metagenomic profiling of diversified marine microbiome across microplastic-contaminated niches of Bay of Bengal, India. | Tripathy B, Singh S, Behera ID, Mishra S, Das AP. | Mar Pollut Bull | 10.1016/j.marpolbul.2025.118872 | 2025 | |
| Metabolism | Identifying anaerobic amino acids degraders through the comparison of short-term and long-term enrichments. | Mei R, Nobu MK, Liu WT. | Environ Microbiol Rep | 10.1111/1758-2229.12821 | 2020 | |
| Genetics | Metagenomic and Metatranscriptomic Analyses Revealed Uncultured Bacteroidales Populations as the Dominant Proteolytic Amino Acid Degraders in Anaerobic Digesters. | Mei R, Nobu MK, Narihiro T, Liu WT. | Front Microbiol | 10.3389/fmicb.2020.593006 | 2020 | |
| Metabolism | Anoxic Biodegradation of Isosaccharinic Acids at Alkaline pH by Natural Microbial Communities. | Rout SP, Charles CJ, Doulgeris C, McCarthy AJ, Rooks DJ, Loughnane JP, Laws AP, Humphreys PN. | PLoS One | 10.1371/journal.pone.0137682 | 2015 | |
| Phylogeny | Fermentative bacteria from estuarine mud: phylogenetic position of Acidaminobacter hydrogenoformans and description of a new type of gram-negative, propionigenic bacterium as Propionibacter pelophilus gen. nov., sp. nov. | Meijer WG, Nienhuis-Kuiper ME, Hansen TA. | Int J Syst Bacteriol | 10.1099/00207713-49-3-1039 | 1999 |
| #1225 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2784 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #39471 | ; Curators of the CIP; |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #120003 | Collection of Institut Pasteur ; Curators of the CIP; CIP 106102 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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