Name: Inhella inkyongensis DSM 23958
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17957

Type strain:

Species: Inhella inkyongensis

Culture col. no.: DSM 23958, CCUG 54308, KCTC 12791, LMG 23877, NBRC 103252, IMCC 1713, CIP 110045

Strain history: CIP <- 2009, CCUG <- 2007, KCTC <- J.C. Cho, Inha Univ., Incheon, Korea

NCBI tax ID(s): 392593 (species)

SI-ID 293925

LMG 23877, CCUG 54308, KCTC 12791, NBRC 103252, DSM 23958, CIP 110045

Special Collections

Section

Inhella inkyongensis DSM 23958 is an aerobe, Gram-negative bacterium that was isolated from eutrophic artificial freshwater pond.

Gram-negative
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	[Burkholderiales, not assigned to family]
	Genus	*Inhella*
	Species	**Inhella inkyongensis**
	Full Scientific Name (LPSN)	Inhella inkyongensis Song et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #120120]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.5

[Ref.: #120120]	Cell shape	rod-shaped

[Ref.: #120120]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17452]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #17452]

Culture medium growth

[Ref.: #17452]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17452]

Culture medium composition

expand / minimize

[Ref.: #37915]

Culture medium

MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati

[Ref.: #37915]

Culture medium growth

[Ref.: #37915]

Culture medium composition

expand / minimize

[Ref.: #120120]

Culture medium

CIP Medium 566

[Ref.: #120120]

Culture medium growth

[Ref.: #120120]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #17452]	growth	25 °C
[Ref.: #37915]	growth	30 °C
[Ref.: #60134]	growth	30 °C
[Ref.: #67771]	growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #60134]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %93.153

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #120120]		nitrate ChEBI	-	reduction
[Ref.: #120120]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #120120]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120120]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120120]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #120120]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120120]	12319	-	+	+	+	-	+	-	-	+	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17452]	Sample type/isolated from	eutrophic artificial freshwater pond
[Ref.: #17452]	Geographic location (country and/or sea, region)	Incheon, Inha University, Inkyoung Reservoir
[Ref.: #17452]	Country	Republic of Korea
[Ref.: #17452]	Country ISO 3 Code	KOR
[Ref.: #17452]	Continent	Asia

[Ref.: #60134]	Sample type/isolated from	Freshwater from artificial pond
[Ref.: #60134]	Geographic location (country and/or sea, region)	Inha
[Ref.: #60134]	Country	Republic of Korea
[Ref.: #60134]	Country ISO 3 Code	KOR
[Ref.: #60134]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From freshwater
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #120120]	Sample type/isolated from	Environment, Freshwater, artificial pond
[Ref.: #120120]	Geographic location (country and/or sea, region)	Incheon
[Ref.: #120120]	Country	Republic of Korea
[Ref.: #120120]	Country ISO 3 Code	KOR
[Ref.: #120120]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	#Water reservoir (Aquarium/pool)
#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Pond (small)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ664238 (>99% sequence identity) for Inhella inkyongensis from Microbeatlas

Aquatic Samples	273
Soil Samples	72
Animal Samples	149
Plant Samples	29
Total Samples	523

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17452]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120120]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17452]	Inhella inkyongensis strain IMCC1713 16S ribosomal RNA gene, partial sequence	DQ664238	1472	GenBank ENA	392593 tax ID
[Ref.: #20218]	Inhella inkyongensis gene for 16S rRNA, partial sequence, strain: NBRC 103252	AB681995	1454	GenBank ENA	392593 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Inhella inkyongensis DSM 23958	GCA_014202795	scaffold	GenBank ENA	392593 tax ID	*
[Ref.: #66792]	Inhella inkyongensis strain DSM 23958	392593.7	wgs	PATRIC	392593 tax ID	*
[Ref.: #66792]	Inhella inkyongensis DSM 23958	2861611580	draft	JGI IMG/M	392593 tax ID	*

[Ref.: #17452]

GC-content

57.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Inhella inkyongensis DSM 23958 NCBI: GCA_014202795.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.5	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.806	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.57	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	93.153	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.833	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	87.11	no

Availability in culture collections External links

[Ref.: #17452]

Culture collection no.

DSM 23958, CCUG 54308, KCTC 12791, LMG 23877, NBRC 103252, IMCC 1713, CIP 110045

[Ref.: #86944]

SI-ID 293925

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Inhella inkyongensis gen. nov., sp. nov., a new freshwater bacterium in the order Burkholderiales.	Song J, Oh HM, Lee JS, Woo SB, Cho JC	J Microbiol Biotechnol	8183	2009	*
Phylogeny	Inhella proteolytica sp. nov. and Inhella gelatinilytica sp. nov., two novel species of the genus Inhella isolated from aquaculture water.	Liu Y, Pei T, Du J, Deng MR, Zhu H	Arch Microbiol	10.1007/s00203-021-02264-z	2021	*
Phylogeny	Inhella crocodyli sp. nov., isolated from a crocodile pond.	Chen WM, Xie YR, Young CC, Sheu SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.003496	2019	*
Phylogeny	Inhella fonticola sp. nov., isolated from spring water, and emended description of the genus Inhella.	Chen WM, Sheu FS, Young CC, Sheu SY	Int J Syst Evol Microbiol	10.1099/ijs.0.034884-0	2011	*

References

#17452

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23958

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37915 ; Curators of the CIP;
#60134 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54308

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86944

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID293925.1 )

#120120 Collection of Institut Pasteur ; Curators of the CIP; CIP 110045
* These data were automatically processed and therefore are not curated

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