Name: Xylophilus ampelinus DSM 7250
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17954

Type strain:

Species: Xylophilus ampelinus

Culture col. no.: DSM 7250, ATCC 33914, CNBP 1192, LMG 5856, NCPPB 2217, PDDCC 4298, CCUG 21976, LMG 5857

Strain history: <- NCPPB <- C. G. Panagopoulos

NCBI tax ID(s): 54067 (species)

SI-ID 92461

LMG 5856, ATCC 33914, CECT 547, DSM 3584, ICMP 4298, LMG 5857, LMG 5858, LMG 5949, NCPPB 2217, PDDCC 4298, LMG 515, ICMP 8920, CCUG 21976, DSM 7250, CCM 4479, CFBP 1192, CFBP 3674, CECT 7646

Other strains from Xylophilus ampelinus

X. ampelinus CCUG 15840, NCPPB 2218, ATCC 29074, ...

Section

Xylophilus ampelinus DSM 7250 is a mesophilic plant pathogen that was isolated from Vitis vinifera.

mesophilic
plant pathogen
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Xylophilus*
	Species	**Xylophilus ampelinus**
	Full Scientific Name (LPSN)	Xylophilus ampelinus (Panagopoulos 1969) Willems et al. 1987

Synonym

Xanthomonas ampelina

Information on morphological and physiological properties Morphology

[Ref.: #3072]

Incubation period

8-14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3072]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #3072]

Culture medium growth

[Ref.: #3072]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3072]

Culture medium composition

expand / minimize

[Ref.: #3072]

Culture medium

XYLOPHILUS MEDIUM (DSMZ Medium 587)

[Ref.: #3072]

Culture medium growth

[Ref.: #3072]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3072]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3072]			growth	25 °C
[Ref.: #47532]			growth	24 °C

[Ref.: #3072]	Temperature range	mesophilic
[Ref.: #47532]	Temperature range	psychrophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3072]	Sample type/isolated from	Vitis vinifera
[Ref.: #3072]	Host species	Vitis vinifera
[Ref.: #3072]	Geographic location (country and/or sea, region)	Crete
[Ref.: #3072]	Country	Greece
[Ref.: #3072]	Country ISO 3 Code	GRC
[Ref.: #3072]	Continent	Europe

[Ref.: #47532]	Sample type/isolated from	Vitis vinifera var. sultana
[Ref.: #47532]	Sampling date	1966
[Ref.: #47532]	Geographic location (country and/or sea, region)	Crete
[Ref.: #47532]	Country	Greece
[Ref.: #47532]	Country ISO 3 Code	GRC
[Ref.: #47532]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Shrub (Scrub)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF078758 (>99% sequence identity) for Variovorax from Microbeatlas

Aquatic Samples	178
Soil Samples	103
Animal Samples	174
Plant Samples	141
Total Samples	596

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3072]	Pathogenicity (plant)	yes
[Ref.: #3072]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Xylophilus ampelinus 16S ribosomal RNA gene, partial sequence	AF078758	1518	ENA	54067 tax ID	*
[Ref.: #20218]	Xylophilus ampelinus 16S rRNA gene, strain DSM 7250	AJ420330	1550	ENA	54067 tax ID	*

[Ref.: #3072]

GC-content

68.0 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #3072]

Culture collection no.

DSM 7250, ATCC 33914, CNBP 1192, LMG 5856, NCPPB 2217, PDDCC 4298, CCUG 21976, LMG 5857

[Ref.: #86941]

SI-ID 92461

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Xenophilus aerolatus sp. nov., isolated from air.	Kim SJ, Kim YS, Weon HY, Anandham R, Noh HJ, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.013185-0	2009	*
Phylogeny	Xylophilus rhododendri sp. nov., Isolated from Flower of Royal Azalea, Rhododendron schlippenbachii.	Lee SA, Heo J, Kim TW, Sang MK, Song J, Kwon SW, Weon HY	Curr Microbiol	10.1007/s00284-020-02194-x	2020	*

References

#3072

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7250

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#47532 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 21976

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86941

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92461.1 )

* These data were automatically processed and therefore are not curated

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