Name: Reyranella massiliensis 521
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17881

Type strain:

Species: Reyranella massiliensis

Strain Designation: 521

Culture col. no.: DSM 23428, CSUR P115

Strain history: <- I. Pagnier, URMITE, 27 bd Jean Moulin, 13385 Marseille Cedex 05, France; 521 <- I. Pagnier

NCBI tax ID(s): 445220 (species)

SI-ID 406512

DSM 23428

Other strains from Reyranella massiliensis

R. massiliensis 3B26, DSM 23429, CSUR P117
R. massiliensis S181, DSM 23430, CSUR P116

Section

Reyranella massiliensis 521 is a microaerophile, mesophilic bacterium that was isolated from river water.

mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Reyranellaceae*
	Genus	*Reyranella*
	Species	**Reyranella massiliensis**
	Full Scientific Name (LPSN)	Reyranella massiliensis Pagnier et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #17203]	Type of hemolysis	gamma
[Ref.: #17203]	Incubation period	3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17203]

Culture medium

BCYE-AGAR (DSMZ Medium 585)

[Ref.: #17203]

Culture medium growth

[Ref.: #17203]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17203]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17203]			growth	32 °C

[Ref.: #17203]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #17203]

Oxygen tolerance

microaerophile

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #17203]		catalase	+	1.11.1.6
[Ref.: #17203]		cytochrome-c oxidase	-	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17203]	Sample type/isolated from	river water
[Ref.: #17203]	Geographic location (country and/or sea, region)	Var department, Fréjus, river Le Reyran
[Ref.: #17203]	Country	France
[Ref.: #17203]	Country ISO 3 Code	FRA
[Ref.: #17203]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#River (Creek)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF394922 (>99% sequence identity) for Reyranella massiliensis from Microbeatlas

Aquatic Samples	4050
Soil Samples	5807
Animal Samples	1478
Plant Samples	1087
Total Samples	12422

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17203]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17203]	Reyranella massiliensis strain 521 16S ribosomal RNA gene, partial sequence	EF394922	1445	ENA	1205680 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Reyranella massiliensis 521	GCA_000312425	scaffold	GenBank	1205680 tax ID	*
[Ref.: #66792]	Reyranella massiliensis 521	1205680.3	wgs	PATRIC	1205680 tax ID	*
[Ref.: #66792]	Reyranella massiliensis 521, DSM 23428	2551306131	draft	JGI IMG/M	1205680 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Reyranella massiliensis 521 521 NCBI: GCA_000312425.1
[Ref.: #69480]	motile	no	89.851	no
[Ref.: #69480]	flagellated	no	97.09	no
[Ref.: #69480]	gram-positive	no	96.252	no
[Ref.: #69480]	anaerobic	no	98.561	yes
[Ref.: #69480]	aerobic	yes	84.968	yes
[Ref.: #69480]	halophile	no	94.285	no
[Ref.: #69480]	spore-forming	no	93.106	no
[Ref.: #69480]	glucose-util	yes	74.852	no
[Ref.: #69480]	thermophile	no	96.81	no
[Ref.: #69480]	glucose-ferment	no	87.648	no

Availability in culture collections External links

[Ref.: #17203]

Culture collection no.

DSM 23428, CSUR P115

[Ref.: #86870]

SI-ID 406512

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reyranella graminifolii sp. nov., isolated from bamboo (Phyllostachys bambusoides) litter.	Lee JC, Whang KS	Int J Syst Evol Microbiol	10.1099/ijs.0.062968-0	2014	*
Phylogeny	Isolation and characterization of Reyranella massiliensis gen. nov., sp. nov. from freshwater samples by using an amoeba co-culture procedure.	Pagnier I, Raoult D, La Scola B	Int J Syst Evol Microbiol	10.1099/ijs.0.025775-0	2010	*

References

#17203

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23428

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86870

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406512.1 )

* These data were automatically processed and therefore are not curated

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