Name: Niastella yeongjuensis GR20-13
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17757

Type strain:

Species: Niastella yeongjuensis

Strain Designation: GR20-13

Culture col. no.: DSM 17621, KACC 11466

Strain history: <- S. W. Kwon, KACC; GR20-13

NCBI tax ID(s): 1122606 (strain), 354355 (species)

SI-ID 401957

DSM 17621

Special Collections

Section

Niastella yeongjuensis GR20-13 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil cultivated with Korean ginseng.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Niastella*
	Species	**Niastella yeongjuensis**
	Full Scientific Name (LPSN)	Niastella yeongjuensis Weon et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31772]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %94.062

[Ref.: #31772]	Cell length	10-40 µm

[Ref.: #31772]	Cell width	0.4-0.6 µm

[Ref.: #31772]	Cell shape	rod-shaped

[Ref.: #31772]	Motility	no

[Ref.: #31772]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7092]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7092]

Culture medium growth

[Ref.: #7092]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7092]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7092]	growth	28 °C
[Ref.: #31772]	growth	15-33 °C
[Ref.: #31772]	optimum	30-33 °C

	pH	Kind of pH		pH
[Ref.: #31772]			optimum	7
[Ref.: #31772]			growth	05-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31772]

Oxygen tolerance

aerobe

[Ref.: #31772]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #31772]

Observation

aggregates in chains

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31772]		esculin ChEBI	+	hydrolysis

	Enzyme	Enzyme activity	EC number
[Ref.: #31772]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31772]	alpha-galactosidase	+	3.2.1.22
[Ref.: #31772]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7092]	Sample type/isolated from	soil cultivated with Korean ginseng
[Ref.: #7092]	Geographic location (country and/or sea, region)	Yeongju region of Korea
[Ref.: #7092]	Country	Republic of Korea
[Ref.: #7092]	Country ISO 3 Code	KOR
[Ref.: #7092]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ244076 (>99% sequence identity) for Niastella yeongjuensis from Microbeatlas

Aquatic Samples	13
Soil Samples	458
Animal Samples	12
Plant Samples	173
Total Samples	656

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7092]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7092]	Niastella yeongjuensis strain GR20-13 16S ribosomal RNA gene, partial sequence	DQ244076	1468	GenBank ENA	354355 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Niastella yeongjuensis DSM 17621	GCA_900110245	scaffold	GenBank ENA	354355 tax ID	*
[Ref.: #66792]	Niastella yeongjuensis DSM 17621	GCA_002077935	contig	GenBank ENA	354355 tax ID	*
[Ref.: #66792]	Niastella yeongjuensis strain DSM 17621	354355.6	wgs	PATRIC	354355 tax ID	*
[Ref.: #66792]	Niastella yeongjuensis DSM 17621	2599185237	draft	JGI IMG/M	354355 tax ID	*

[Ref.: #7092]	GC-content	44.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31772]	GC-content	44.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Niastella yeongjuensis DSM 17621 NCBI: GCA_900110245.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Niastella yeongjuensis DSM 17621 NCBI: GCA_900110245.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	94.062	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.818	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.539	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	83.359	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.49	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87.25	yes

Availability in culture collections External links

[Ref.: #7092]

Culture collection no.

DSM 17621, KACC 11466

[Ref.: #86748]

SI-ID 401957

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Niastella soli sp. nov., isolated from rhizospheric soil of a persimmon tree.	Akter S, Park JH, Rahman MM, Huq MA	Int J Syst Evol Microbiol	10.1099/ijsem.0.004870	2021	*
Phylogeny	Rurimicrobium arvi gen. nov., sp. nov., a member of the family Chitinophagaceae isolated from farmland soil.	Dahal RH, Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002452	2017	*
Phylogeny	Niastellahibisci sp. nov., isolated from rhizosphere soil of mugunghwa, the Korean national flower.	Yan ZF, Lin P, Wang YS, Gao W, Li CT, Kook MC, Yi TH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001498	2016	*
Phylogeny	Niastella gongjuensis sp. nov., isolated from greenhouse soil.	Kim SJ, Ahn JH, Weon HY, Hong SB, Seok SJ, Kim JS, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijsem.0.000387	2015	*
Phylogeny	Lacibacter cauensis gen. nov., sp. nov., a novel member of the phylum Bacteroidetes isolated from sediment of a eutrophic lake.	Qu JH, Yuan HL, Yang JS, Li HF, Chen N	Int J Syst Evol Microbiol	10.1099/ijs.0.003475-0	2009	*
Phylogeny	Niabella aurantiaca gen. nov., sp. nov., isolated from a greenhouse soil in Korea.	Kim BY, Weon HY, Yoo SH, Hong SB, Kwon SW, Stackebrandt E, Go SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64614-0	2007	*
Phylogeny	Niastella koreensis gen. nov., sp. nov. and Niastella yeongjuensis sp. nov., novel members of the phylum Bacteroidetes, isolated from soil cultivated with Korean ginseng.	Weon HY, Kim BY, Yoo SH, Lee SY, Kwon SW, Go SJ, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.64242-0	2006	*

References

#7092

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17621

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31772

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28045 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86748

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401957.1 )

#28045

IJSEM 1777 2006 ( DOI 10.1099/ijs.0.64242-0 , PubMed 16902007 )

* These data were automatically processed and therefore are not curated

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Niastella yeongjuensis DSM 17621

Niastella yeongjuensis DSM 17621

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