Terrimonas ferruginea (DSM 30193, ATCC 13524, IAM 15098)

Name: Terrimonas ferruginea (DSM 30193, ATCC 13524, IAM 15098)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17755

Type strain

Strain Designation 3576

Culture col. no. DSM 30193 ATCC 13524 IAM 15098 LMG 4021 NBRC 14992 8 more

NCBI tax ID(s) 1123356 249

Special Collections DSMZ CCUG JCM CIP

History <- ATCC <- J.M. Coffey, 3576 2006, IAM IAM 15098 <-- NBRC 14992 <-- IFO 14992 <-- ATCC 13524 <-- J. M. Coffey. CIP <- 2006, IAM

Links

Terrimonas ferruginea 3576 is an obligate aerobe, mesophilic, Gram-negative prokaryote of the family Chitinophagaceae.

Gram-negative rod-shaped obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 2823

LMG 4021,ATCC 13524,DSM 30193,IFO 14992,LMG 10403,NCIMB 11299,CCUG 33443,NCIB 11299,KCTC 2909,NCCB 95039,LMD 95.39,NBRC 14992,CDBB 61,IAM 15098,JCM 21559,CIP 109225

@ref 20215

Last LPSN update 2026-02-09 11:22:18

Domain Bacteria

Phylum Bacteroidota

Class Chitinophagia

Order Chitinophagales

Family Chitinophagaceae

Genus Terrimonas

Species Terrimonas ferruginea

Full scientific name Terrimonas ferruginea (Sickles and Shaw 1934) Xie and Yokota 2006

Synonyms (1)

Flavobacterium ferrugineum

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
125439	negative			99.7
119334	negative	rod-shaped

Multimedia

@ref:	66793
multimedia content:	EM_DSM_30193_1.jpg
multimedia.multimedia content:	EM_DSM_30193_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_30193_2.jpg
multimedia.multimedia content:	EM_DSM_30193_2.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_30193_3.jpg
multimedia.multimedia content:	EM_DSM_30193_3.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_30193_4.jpg
multimedia.multimedia content:	EM_DSM_30193_4.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_30193_5.jpg
multimedia.multimedia content:	EM_DSM_30193_5.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
9194	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
37466	MEDIUM 328- for nutrient agar		Distilled water make up to (1000.000 ml);Agar (15.000 g);Peptone (5.000g);Beef extract (3.000 g)
119334	CIP Medium 328	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
9194	positive	growth	30	mesophilic
37466	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
119334	obligate aerobe
125439	obligate aerobe	97.5

Spore formation

@ref	Spore formation	Confidence
125439		99

Compound production

9194

CompoundL carnitine

Observation

67770

Observationquinones: MK-7, MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
119334	17632 ChEBI	nitrate	-	reduction
119334	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
119334	132112 ChEBI	sodium thiosulfate	-	builds gas from
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119334	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
119334	15688 ChEBI	acetoin	+

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
119334	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119334	catalase	-	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119334	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
119334	tryptophan deaminase	-
119334	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

Fatty acid profile

Metadata FA analysis

@ref

51522

Fatty acid	Percentage	ECL
C13:0 3OH/C15:1 i I/H	36.8	14.469
C15:0 ISO	33.3	14.621
C16:1 ω7c/C15:0 ISO 2OH	7.8	15.85
C17:0 iso 3OH	5.8	18.161
unknown 13.566	4	13.566
C15:0	3.1	15
C18:2 ω6,9c/C18:0 ANTE	2	17.724
C16:0	1.8	16
C15:0 ISO 3OH	1.6	16.135
C16:0 3OH	1.3	17.52
C14:0	1	14
C13:0 iso	0.9	12.612
C16:0 anteiso	0.6	15.717

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119334	-	+	+	+	-	+	+	+	-	-	+	+	-	+	-	-	+	+	+	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
119334	not determinedn.d.	-	-	-	+/-	-	+/-	-	+/-	-	-	+/-	-	+/-	-	+/-	-	-	-	-	-	-	-	-	-	+/-	-	+/-	+/-	-	-	-	-	-	-	-	+/-	+/-	-	+/-	+/-	-	-	-	-	-	-	-	-	+/-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
37466		Japan	JPN	Asia
67770	Soil
119334	Environment, Soil sample	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AM230484 (>99% sequence identity) for Terrimonas ferruginea subclade from Microbeatlas

Aquatic Samples	1658
Soil Samples	1362
Animal Samples	212
Plant Samples	199
Total Samples	3431

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9194	1	Risk group (German classification) According to TRBA 466
119334	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM42558v1 assembly for Terrimonas ferruginea DSM 30193	scaffold	GCA_000425585	1123356.3	2523533530	1123356	71.84

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	F.ferrugineum 16S ribosomal RNA	M62798	1535	249
20218	Flavobacterium ferrugineum partial 16S rRNA gene, type strain DSM 30193	AM230484	1519	249
20218	Terrimonas ferruginea gene for 16S rRNA, partial sequence, strain: NBRC 14992	AB680736	1456	249

GC content

@ref	GC-content (mol%)	Method
67770	48.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Terrimonas ferruginea DSM 30193
NCBI: GCA_000425585

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.50	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	motility	BacteriaNetⓘ	no	59.60	no
125439	spore_formation	BacteriaNetⓘ	no	99.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Terrimonas ferruginea DSM 30193
PATRIC: 1123356.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	89.18	no
125438	anaerobic	anaerobicⓘ	no	99.61	no
125438	spore-forming	spore-formingⓘ	no	88.77	no
125438	aerobic	aerobicⓘ	yes	86.49	no
125438	thermophilic	thermophileⓘ	no	99.16	yes
125438	flagellated	motile2+ⓘ	no	89.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	PULDB: the expanded database of Polysaccharide Utilization Loci.	Terrapon N, Lombard V, Drula E, Lapebie P, Al-Masaudi S, Gilbert HJ, Henrissat B.	Nucleic Acids Res	10.1093/nar/gkx1022	2018
Phylogeny	Evaluation of matrix-assisted laser desorption ionization-time-of-flight mass spectrometry in comparison to 16S rRNA gene sequencing for species identification of nonfermenting bacteria.	Mellmann A, Cloud J, Maier T, Keckevoet U, Ramminger I, Iwen P, Dunn J, Hall G, Wilson D, Lasala P, Kostrzewa M, Harmsen D.	J Clin Microbiol	10.1128/jcm.00157-08	2008
Phylogeny	New degenerate Cytophaga-Flexibacter-Bacteroides-specific 16S ribosomal DNA-targeted oligonucleotide probes reveal high bacterial diversity in River Taff epilithon.	O'Sullivan LA, Weightman AJ, Fry JC.	Appl Environ Microbiol	10.1128/aem.68.1.201-210.2002	2002
Metabolism	Evidence for natural horizontal transfer of the pcpB gene in the evolution of polychlorophenol-degrading sphingomonads.	Tiirola MA, Wang H, Paulin L, Kulomaa MS.	Appl Environ Microbiol	10.1128/aem.68.9.4495-4501.2002	2002
Phylogeny	Terrimonas rhizosphaerae sp. nov., isolated from ginseng rhizosphere soil.	Han SI, Lee YR, Kim JO, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001639	2017
Phylogeny	Filimonas aurantiibacter sp. nov., an orange-pigmented bacterium isolated from lake water and emended description of the genus Filimonas.	Albert RA, Waas NE, Pavlons SC, Pearson JL, Roecker J, Tewalt N, Cleeve N, Rossello-Mora R, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001305	2016
Phylogeny	Terrimonas pekingensis sp. nov., isolated from bulking sludge, and emended descriptions of the genus Terrimonas, Terrimonas ferruginea, Terrimonas lutea and Terrimonas aquatica.	Jin D, Wang P, Bai Z, Jin B, Yu Z, Wang X, Zhuang G, Zhang H	Int J Syst Evol Microbiol	10.1099/ijs.0.036848-0	2012
Phylogeny	Flavitalea populi gen. nov., sp. nov., isolated from soil of a Euphrates poplar (Populus euphratica) forest.	Wang Y, Cai F, Tang Y, Dai J, Qi H, Rahman E, Peng F, Fang C	Int J Syst Evol Microbiol	10.1099/ijs.0.025221-0	2010
Phylogeny	Terrimonas aquatica sp. nov., isolated from a freshwater spring.	Sheu SY, Cho NT, Arun AB, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.020164-0	2010
Phylogeny	Sediminibacterium salmoneum gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from sediment of a eutrophic reservoir.	Qu JH, Yuan HL	Int J Syst Evol Microbiol	10.1099/ijs.0.65514-0	2008
Phylogeny	Niabella aurantiaca gen. nov., sp. nov., isolated from a greenhouse soil in Korea.	Kim BY, Weon HY, Yoo SH, Hong SB, Kwon SW, Stackebrandt E, Go SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64614-0	2007
Phylogeny	Niastella koreensis gen. nov., sp. nov. and Niastella yeongjuensis sp. nov., novel members of the phylum Bacteroidetes, isolated from soil cultivated with Korean ginseng.	Weon HY, Kim BY, Yoo SH, Lee SY, Kwon SW, Go SJ, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.64242-0	2006
Phylogeny	Reclassification of [Flavobacterium] ferrugineum as Terrimonas ferruginea gen. nov., comb. nov., and description of Terrimonas lutea sp. nov., isolated from soil.	Xie CH, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.64115-0	2006

References

#9194	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30193
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#37466	; Curators of the CIP;
#51522	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 33443
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119334	Collection of Institut Pasteur ; Curators of the CIP; CIP 109225
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Terrimonas ferruginea (DSM 30193, ATCC 13524, IAM 15098)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile?

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000425585

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media

Fatty acid profile