Algoriphagus marincola (DSM 16067, KCTC 12180, SW2)

Name: Algoriphagus marincola (DSM 16067, KCTC 12180, SW2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17696

Type strain

Strain Designation SW2

Culture col. no. DSM 16067 KCTC 12180 SW2 JCM 12319

NCBI tax ID(s) 1120966 264027

Special Collections DSMZ JCM KCTC

History <- J.-H. Yoon; SW2 J.-H. Yoon SW-2. <- Jung-Hoon Yoon, KRIBB

Links

Algoriphagus marincola SW2 is an aerobe, rod-shaped bacterium that was isolated from sea water.

rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 134290

DSM 16067,KCTC 12180,JCM 12319

@ref 20215

Last LPSN update 2026-02-09 11:22:17

Domain Bacteria

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Cyclobacteriaceae

Genus Algoriphagus

Species Algoriphagus marincola

Full scientific name Algoriphagus marincola (Yoon et al. 2004) Nedashkovskaya et al. 2007

Synonyms (1)

Hongiella marincola

BacDive ID	Other strains from **Algoriphagus marincola** (1)	Type strain
17697	A. marincola SW26, DSM 16068, JCM 12320, KCTC 12181

Morphology

Cell morphology

@ref	Cell shape	Gram stain	Confidence
67771	rod-shaped
67771		negative
125438			91.5
125438		negative	96.804
125439		negative	99.9

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6253	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
6253	positive	growth	30-37
67770	positive	growth	30
67771	positive	growth	37

Physiology and metabolism

Oxygen tolerance

67771

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.8

Observation

@ref	Observation
67770	quinones: MK-7
67771	quinones: MK-7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6253	sea water		Republic of Korea	KOR	Asia
67770	Seawater from Hwajinpo Beach		Republic of Korea	KOR	Asia
67771	From seawater	the East Sea	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence NR_025808 (>99% sequence identity) for Algoriphagus marincola subclade from Microbeatlas

Aquatic Samples	287
Soil Samples	21
Animal Samples	61
Plant Samples	3
Total Samples	372

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6253	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM42940v1 assembly for Algoriphagus marincola DSM 16067	scaffold	GCA_000429405	1120966.3	2523533625	1120966	72.54

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Hongiella marincola strain SW-2 16S ribosomal RNA gene, partial sequence	AY533663	1476		264027
6253	Algoriphagus marincola strain SW-2 16S ribosomal RNA, partial sequence	NR_025808	1476		264027

GC content

@ref	GC-content (mol%)	Method
6253	41.9	sequence analysis
67770	43	high performance liquid chromatography (HPLC)
67771	43.0	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Algoriphagus marincola DSM 16067 DSM 16067
NCBI: GCA_000429405

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	77.40	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	motility	BacteriaNetⓘ	no	76.00	no
125439	spore_formation	BacteriaNetⓘ	no	99.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Algoriphagus marincola DSM 16067
PATRIC: 1120966.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.80	yes
125438	anaerobic	anaerobicⓘ	no	92.19	yes
125438	spore-forming	spore-formingⓘ	no	86.44	no
125438	aerobic	aerobicⓘ	yes	87.79	yes
125438	thermophilic	thermophileⓘ	no	96.79	yes
125438	flagellated	motile2+ⓘ	no	91.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Enhancing the Thermotolerance of Isochrysis zhangjiangensis Through Co-culturing With Algoriphagus marincola.	Xu S, Cao J, Wu M, Xu Y, Wu Y, Shang K, Ma B, Zhang L, Chen D, Liu X, Yan X, Xu J.	Mar Biotechnol (NY)	10.1007/s10126-023-10219-2	2023
Genetics	Identification and Resolution of Microdiversity through Metagenomic Sequencing of Parallel Consortia.	Nelson WC, Maezato Y, Wu YW, Romine MF, Lindemann SR.	Appl Environ Microbiol	10.1128/aem.02274-15	2016
	Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions.	Cole JK, Hutchison JR, Renslow RS, Kim YM, Chrisler WB, Engelmann HE, Dohnalkova AC, Hu D, Metz TO, Fredrickson JK, Lindemann SR.	Front Microbiol	10.3389/fmicb.2014.00109	2014
	Prediction of multi-drug resistance transporters using a novel sequence analysis method.	McDermott JE, Bruillard P, Overall CC, Gosink L, Lindemann SR.	F1000Res	10.12688/f1000research.6200.2	2015
Phylogeny	Genome-Based Taxonomic Classification of Bacteroidetes.	Hahnke RL, Meier-Kolthoff JP, Garcia-Lopez M, Mukherjee S, Huntemann M, Ivanova NN, Woyke T, Kyrpides NC, Klenk HP, Goker M.	Front Microbiol	10.3389/fmicb.2016.02003	2016
Phylogeny	Algoriphagus kandeliae sp. nov., isolated from mangrove rhizosphere soil.	Song ZM, Wang KL, Yin Q, Chen CC, Xu Y.	Int J Syst Evol Microbiol	10.1099/ijsem.0.003954	2020
Phylogeny	Algoriphagus formosus sp. nov., isolated from coastal sediment.	Ye MQ, Wang XT, Zhang J, Chen GJ, Du ZJ.	Antonie Van Leeuwenhoek	10.1007/s10482-017-0990-8	2018
Phylogeny	Algoriphagus aquimaris sp. nov., isolated from seashore sand.	Kim J, Yoon SH, Yang KH, Kim S, Lee SS	Int J Syst Evol Microbiol	10.1099/ijsem.0.003793	2020
Phylogeny	Hongiella marincola sp. nov., isolated from sea water of the East Sea in Korea.	Yoon JH, Yeo SH, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.63170-0	2004

References

#6253	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16067
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Algoriphagus marincola (DSM 16067, KCTC 12180, SW2)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000429405

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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