Name: Algoriphagus marincola SW2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17696

Type strain:

Species: Algoriphagus marincola

Strain Designation: SW2

Culture col. no.: DSM 16067, KCTC 12180, JCM 12319

Strain history: <- Jung-Hoon Yoon, KRIBB

NCBI tax ID(s): 1120966 (strain), 264027 (species)

SI-ID 134290

DSM 16067, KCTC 12180, JCM 12319

Other strains from Algoriphagus marincola

A. marincola SW26, DSM 16068, JCM 12320, KCTC ...

Section

Algoriphagus marincola SW2 is an aerobe, mesophilic, rod-shaped bacterium that was isolated from sea water.

rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Cyclobacteriaceae*
	Genus	*Algoriphagus*
	Species	**Algoriphagus marincola**
	Full Scientific Name (LPSN)	Algoriphagus marincola (Yoon et al. 2004) Nedashkovskaya et al. 2007

Synonym

Hongiella marincola

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.993

[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #67771]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.144

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6253]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6253]

Culture medium growth

[Ref.: #6253]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6253]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6253]	growth	30-37 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	37 °C

[Ref.: #6253]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.978

[Ref.: #67770]	Observation	quinones: MK-7
[Ref.: #67771]	Observation	quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6253]	Sample type/isolated from	sea water
[Ref.: #6253]	Country	Republic of Korea
[Ref.: #6253]	Country ISO 3 Code	KOR
[Ref.: #6253]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Seawater from Hwajinpo Beach
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	the East Sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence NR_025808 (>99% sequence identity) for Algoriphagus marincola subclade from Microbeatlas

Aquatic Samples	287
Soil Samples	21
Animal Samples	61
Plant Samples	3
Total Samples	372

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6253]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6253]	Algoriphagus marincola strain SW-2 16S ribosomal RNA, partial sequence	NR_025808	1476	GenBank	264027 tax ID
[Ref.: #20218]	Hongiella marincola strain SW-2 16S ribosomal RNA gene, partial sequence	AY533663	1476	ENA	264027 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Algoriphagus marincola DSM 16067 DSM 16067	GCA_000429405	scaffold	GenBank	1120966 tax ID
[Ref.: #66792]	Algoriphagus marincola DSM 16067	1120966.3	wgs	PATRIC	1120966 tax ID	*
[Ref.: #66792]	Algoriphagus marincola DSM 16067	2523533625	draft	JGI IMG/M	1120966 tax ID	*

[Ref.: #6253]	GC-content	41.9 mol%	sequence analysis
[Ref.: #67770]	GC-content	43 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	43.0 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Algoriphagus marincola DSM 16067 DSM 16067 NCBI: GCA_000429405.1
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Algoriphagus marincola DSM 16067 PATRIC: 1120966.3
[Ref.: #69480]	motile	no	91.683	yes
[Ref.: #69480]	flagellated	no	96.896	yes
[Ref.: #69480]	gram-positive	no	97.566	yes
[Ref.: #69480]	anaerobic	no	97.952	yes
[Ref.: #69480]	aerobic	yes	86.23	yes
[Ref.: #69480]	halophile	no	70.073	no
[Ref.: #69480]	spore-forming	no	93.844	no
[Ref.: #69480]	glucose-util	yes	89.789	no
[Ref.: #69480]	thermophile	no	97.801	yes
[Ref.: #69480]	glucose-ferment	no	87.805	no

Availability in culture collections External links

[Ref.: #6253]

Culture collection no.

DSM 16067, KCTC 12180, JCM 12319

[Ref.: #86687]

SI-ID 134290

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algoriphagus aquimaris sp. nov., isolated from seashore sand.	Kim J, Yoon SH, Yang KH, Kim S, Lee SS	Int J Syst Evol Microbiol	10.1099/ijsem.0.003793	2020	*
Phylogeny	Hongiella marincola sp. nov., isolated from sea water of the East Sea in Korea.	Yoon JH, Yeo SH, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.63170-0	2004	*

References

#6253

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16067

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86687

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134290.1 )

* These data were automatically processed and therefore are not curated

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Algoriphagus marincola DSM 16067 DSM 16067

Algoriphagus marincola DSM 16067

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