Name: Fastidiosipila sanguinis Karld BL3524N/03
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17690

Type strain:

Species: Fastidiosipila sanguinis

Strain Designation: Karld BL3524N/03

Culture col. no.: DSM 18896, CCUG 47711, CIP 108292

Strain history: CIP <- 2004, CCUG <- T. Ahlqvist, Karlstad, Sweden

NCBI tax ID(s): 236753 (species)

SI-ID 111151

CCUG 47711, CIP 108292, DSM 18896

Other strains from Fastidiosipila sanguinis

F. sanguinis CIP 108045, CCUG 47367

Section

Fastidiosipila sanguinis Karld BL3524N/03 is an anaerobe, mesophilic, Gram-positive human pathogen that was isolated from human blood.

coccus-shaped
Gram-positive
anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Fastidiosipila*
	Species	**Fastidiosipila sanguinis**
	Full Scientific Name (LPSN)	Fastidiosipila sanguinis Falsen et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31329]	Gram stain	positive
[Ref.: #122423]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %99.998

[Ref.: #31329]	Cell shape	coccus-shaped
[Ref.: #122423]	Cell shape	coccus-shaped

[Ref.: #31329]	Motility	no
[Ref.: #122423]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.376

[Ref.: #57833]

Incubation period

2 days

[Ref.: #31329]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7762]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #7762]

Culture medium growth

[Ref.: #7762]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7762]

Culture medium composition

expand / minimize

[Ref.: #39991]

Culture medium

MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and Neisseria

[Ref.: #39991]

Culture medium growth

[Ref.: #39991]

Culture medium composition

expand / minimize

[Ref.: #122423]

Culture medium

CIP Medium 10

[Ref.: #122423]

Culture medium growth

[Ref.: #122423]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7762]	growth	37 °C
[Ref.: #39991]	growth	37 °C
[Ref.: #57833]	growth	37 °C

[Ref.: #7762]	Temperature range	mesophilic
[Ref.: #39991]	Temperature range	mesophilic
[Ref.: #57833]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7762]	Oxygen tolerance	anaerobe
[Ref.: #7762]	Oxygen tolerance	microaerophile
[Ref.: #31329]	Oxygen tolerance	aerobe
[Ref.: #57833]	Oxygen tolerance	anaerobe
[Ref.: #57833]	Oxygen tolerance	microaerophile

[Ref.: #31329]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

[Ref.: #31329]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #122423]	cellobiose ChEBI	-	degradation
[Ref.: #122423]	D-arabinose ChEBI	-	degradation
[Ref.: #122423]	D-fructose ChEBI	-	degradation
[Ref.: #122423]	D-glucose ChEBI	-	degradation
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #122423]	D-xylose ChEBI	-	degradation
[Ref.: #122423]	esculin ChEBI	+	hydrolysis
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #122423]	lactose ChEBI	-	degradation
[Ref.: #122423]	maltose ChEBI	-	degradation
[Ref.: #122423]	nitrate ChEBI	-	reduction
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #122423]	nitrite ChEBI	-	reduction
[Ref.: #31329]	proline ChEBI	+	carbon source
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #122423]	salicin ChEBI	-	degradation
[Ref.: #122423]	sucrose ChEBI	-	degradation
[Ref.: #122423]	tributyrin ChEBI	+	hydrolysis
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #122423]		indole ChEBI	no
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A, API zym
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68380]	alpha-fucosidase	+	3.2.1.51	* from API rID32A
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #31329]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68380]	alpha-galactosidase	+	3.2.1.22	* from API rID32A, API zym
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A, API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #122423]	amylase	-
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #122423]	beta-galactosidase	-	3.2.1.23
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A, API zym
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A, API zym
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #122423]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #122423]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122423]	gelatinase	-
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #122423]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #122423]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32A, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122423]	oxidase	-
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #122423]	protease	-
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #122423]	tween esterase	+
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #122423]	urease	-	3.5.1.5
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #57833]

Fatty acid	Percentage	ECL
C16:0	36.7	16
C18:2 ω6,9c/C18:0 ANTE	21.1	17.724
C18:1 ω9c	20.4	17.769
C18:0	9.5	18
C14:0	8.3	14
C16:1 ω7c	2.6	15.819
C17:1 ISO I/C16:0 DMA	1.4	16.481

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #7762]	12671	-	-	+	+	-	+	+	-	+/-	+	-	-	-	+	-	-	-	-	+/-	-	-	+/-	-	-	+/-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122423]	11059	-	-	+	+	-	+	-	-	-	-	-	+	+	+	+	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7762]	Sample type/isolated from	human blood
[Ref.: #7762]	Country	Sweden
[Ref.: #7762]	Country ISO 3 Code	SWE
[Ref.: #7762]	Continent	Europe

[Ref.: #57833]	Sample type/isolated from	Human blood,84-yr-old man
[Ref.: #57833]	Sampling date	2003-05-01
[Ref.: #57833]	Geographic location (country and/or sea, region)	Karlstad
[Ref.: #57833]	Country	Sweden
[Ref.: #57833]	Country ISO 3 Code	SWE
[Ref.: #57833]	Continent	Europe

[Ref.: #122423]	Sample type/isolated from	Human, Blood
[Ref.: #122423]	Country	Sweden
[Ref.: #122423]	Country ISO 3 Code	SWE
[Ref.: #122423]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7762]	Pathogenicity (human)	yes, in single cases
[Ref.: #7762]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122423]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7762]	Fastidiosipila sanguinis 16S rRNA gene, type strain CCUG 47367	AJ575187	1389	ENA	236753 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Fastidiosipila sanguinis CCUG 47711	GCA_002998295	complete	GenBank	236753 tax ID	*
[Ref.: #66792]	Fastidiosipila sanguinis strain CCUG 47711	236753.3	complete	PATRIC	236753 tax ID	*
[Ref.: #66792]	Fastidiosipila sanguinis CCUG 47711	2788500238	complete	JGI IMG/M	236753 tax ID	*

[Ref.: #7762]

GC-content

32.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Fastidiosipila sanguinis CCUG 47711 NCBI: GCA_002998295.1
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Fastidiosipila sanguinis CCUG 47711 NCBI: GCA_002998295.1
[Ref.: #69480]	flagellated	no	95.707	no
[Ref.: #69480]	gram-positive	yes	87.951	no
[Ref.: #69480]	anaerobic	yes	83.467	no
[Ref.: #69480]	aerobic	no	96.065	no
[Ref.: #69480]	halophile	no	50	no
[Ref.: #69480]	spore-forming	no	93.911	yes
[Ref.: #69480]	glucose-util	yes	92.468	no
[Ref.: #69480]	thermophile	no	98.55	yes
[Ref.: #69480]	motile	no	92.781	yes
[Ref.: #69480]	glucose-ferment	yes	81.795	no

Availability in culture collections External links

[Ref.: #7762]

Culture collection no.

DSM 18896, CCUG 47711, CIP 108292

[Ref.: #86681]

SI-ID 111151

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Fastidiosipila sanguinis gen. nov., sp. nov., a new Gram-positive, coccus-shaped organism from human blood.	Falsen E, Collins MD, Welinder-Olsson C, Song Y, Finegold SM, Lawson PA	Int J Syst Evol Microbiol	10.1099/ijs.0.63327-0	2005	*

References

#7762

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18896

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31329

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27643 (see below)

#39991 ; Curators of the CIP;
#57833 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47711

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68380

Automatically annotated from API rID32A .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86681

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID111151.1 )

#122423 Collection of Institut Pasteur ; Curators of the CIP; CIP 108292

#27643

IJSEM 853 2005 ( DOI 10.1099/ijs.0.63327-0 , PubMed 15774674 )

* These data were automatically processed and therefore are not curated

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Fastidiosipila sanguinis CCUG 47711

Fastidiosipila sanguinis CCUG 47711

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