Name: Xanthomonas translucens VdM 130
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17612

Type strain:

Species: Xanthomonas translucens

Strain Designation: VdM 130

Culture col. no.: DSM 18974, ATCC 19319, ICMP 5752, ICPB XT2, NCPPB 973, PDDCC 5752, CFBP 2054, LMG 876

Strain history: <- NCPPB <- ICPB <- C. Reddy

NCBI tax ID(s): 343 (species)

SI-ID 5981

LMG 876, ATCC 19319, ICMP 5752, NCPPB 973, PDDCC 5752, CIP 105145, CFBP 2054, CECT 4643, DSM 18974

Special Collections

DSMZ

Section

Xanthomonas translucens VdM 130 is a Gram-negative plant pathogen that was isolated from Hordeum vulgare.

Gram-negative
plant pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Xanthomonas*
	Species	**Xanthomonas translucens**
	Full Scientific Name (LPSN)	Xanthomonas translucens (ex Jones et al. 1917) Vauterin et al. 1995

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.244

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7807]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #7807]

Culture medium growth

[Ref.: #7807]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7807]

Culture medium composition

expand / minimize

[Ref.: #39206]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #39206]

Culture medium growth

[Ref.: #39206]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7807]			growth	28 °C
[Ref.: #39206]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %99

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7807]	Sample type/isolated from	Hordeum vulgare
[Ref.: #7807]	Host species	Hordeum vulgare
[Ref.: #7807]	Geographic location (country and/or sea, region)	Minnesota
[Ref.: #7807]	Country	USA
[Ref.: #7807]	Country ISO 3 Code	USA
[Ref.: #7807]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X99299 (>99% sequence identity) for Xanthomonas from Microbeatlas

Aquatic Samples	3769
Soil Samples	5101
Animal Samples	5827
Plant Samples	5320
Total Samples	20017

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7807]	Pathogenicity (plant)	yes
[Ref.: #7807]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7807]	X.campestris 16S rRNA gene, strain LMG 876	X99299	1500	GenBank ENA	339 tax ID
[Ref.: #124043]	Xanthomonas translucens strain LMG876 16S-23S ribosomal RNA intergenic spacer, complete sequence.	AF209764	540	GenBank ENA	343 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Xanthomonas translucens pv. translucens DSM 18974 peng1	GCA_900094325	complete	GenBank ENA	1261556 tax ID	*
[Ref.: #66792]	Xanthomonas translucens pv. translucens DSM 18974	GCA_000331775	contig	GenBank ENA	1261556 tax ID	*
[Ref.: #66792]	Xanthomonas translucens pv. translucens DSM 18974	1261556.3	wgs	PATRIC	1261556 tax ID	*
[Ref.: #66792]	Xanthomonas translucens pv. translucens DSM 18974	1261556.5	complete	PATRIC	1261556 tax ID	*
[Ref.: #66792]	Xanthomonas translucens pv. translucens DSM 18974	2896739717	complete	JGI IMG/M	1261556 tax ID	*
[Ref.: #66792]	Xanthomonas translucens pv. translucens DSM 18974	2529293066	draft	JGI IMG/M	1261556 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Xanthomonas translucens pv. translucens DSM 18974 PATRIC: 1261556.5
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Xanthomonas translucens pv. translucens DSM 18974 peng1 NCBI: GCA_900094325.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.244	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.116	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.742	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.579	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.409	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	66.166	no

Availability in culture collections External links

[Ref.: #7807]

Culture collection no.

DSM 18974, ATCC 19319, ICMP 5752, ICPB XT2, NCPPB 973, PDDCC 5752, CFBP 2054, LMG 876

[Ref.: #86605]

SI-ID 5981

Literature:

	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974T (ATCC 19319T).	Jaenicke S, Bunk B, Wibberg D, Sproer C, Hersemann L, Blom J, Winkler A, Schatschneider S, Albaum SP, Kolliker R, Goesmann A, Puhler A, Overmann J, Vorholter FJ	Genome Announc	10.1128/genomeA.01334-16	2016	*
	Complete Genome Assemblies of All Xanthomonas translucens Pathotype Strains Reveal Three Genetically Distinct Clades.	Goettelmann F, Roman-Reyna V, Cunnac S, Jacobs JM, Bragard C, Studer B, Koebnik R, Kolliker R	Front Microbiol	10.3389/fmicb.2021.817815	2022	*
	First report of bacterial leaf streak caused by Xanthomonas translucens pv. undulosa on cultivated wild rice (Zizania palustris) in Minnesota.	Curland RD, Hallada KR, Ledman KE, Dill-Macky R	Plant Dis	10.1094/PDIS-02-21-0407-PDN	2021	*

References

#7807

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18974

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#39206 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86605

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID5981.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Xanthomonas translucens pv. translucens DSM 18974

Xanthomonas translucens pv. translucens DSM 18974 peng1

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