Stenotrophomonas pavanii (CCUG 59972, DSM 25135, CBMAI 564)

Name: Stenotrophomonas pavanii (CCUG 59972, DSM 25135, CBMAI 564)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17570

Type strain

Culture col. no. CCUG 59972 DSM 25135 CBMAI 564 ICB 89 LMG 25348 1 more

NCBI tax ID(s) 487698

Special Collections DSMZ CCUG Literature strains CIP

History DSMZ <- LMG <- S. Van Trappen, Univ. Ghent, Belgium <- H. R. Barbosa, Univ. Sao Paulo, Brazil CIP <- 2019, LMG <- 2009, S. Van Trappen, LMG <- 2008, P.L. Ramos, Sao Paulo Univ., Sao Paulo, Brazil <- H.R. Barbosa, Biomedical Sciences Inst., Sao Paulo Univ., Sao Paulo, Brazil: strain ICB 89

Links

Stenotrophomonas pavanii CCUG 59972 is a Gram-negative, rod-shaped bacterium that was isolated from stems of sugar cane .

Gram-negative rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 363691

LMG 25348,CBMAI 564,DSM 25135,CCUG 59972,CIP 111741

@ref 20215

Last LPSN update 2026-05-29 08:29:02

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Lysobacteraceae

Genus Stenotrophomonas

Species Stenotrophomonas pavanii

Full scientific name Stenotrophomonas pavanii Ramos et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
29715	negative	rod-shaped
125439	negative		94.558
125438	negative		99.244
121642	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17917	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
121642	CIP Medium 72		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
17917	positive	growth	28
29715	positive	growth	20-37
29715	positive	optimum	28.5

Culture pH

@ref	Ability	Type	PH	PH range
29715	positive	optimum	8.5
29715	positive	growth	05-12	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.091

Spore formation

@ref	Spore formation	Confidence
29715
125439		98.979
125438		90.386

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29715	NaCl	positive	growth	0.7-3.0 %
29715	NaCl	positive	optimum	1.85 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
29715	16947 ChEBI	citrate	+	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
29715	4853 ChEBI	esculin	+	hydrolysis
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
29715	506227 ChEBI	N-acetylglucosamine	+	carbon source
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
29715	53426 ChEBI	tween 80	+	carbon source
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
29715	catalase	+	1.11.1.6
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
29715	gelatinase	+
68369	gelatinase	+		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
17917	-	-	-	-	-	+	+	+	+	-	+	-	+	+	-	-	-	+	+	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Stem (Branch)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
17917	stems of sugar cane (Brazilian variety widely used in organic farming)	Sao Francisco Sertaozinho	Brazil	BRA	Middle and South America
62173	Sugarcane plant stem,organic cultivated		Brazil	BRA	Middle and South America
121642	Sugarcane, Saccharum officinarum, stem	Usina Sao Francisco Sertaozinho	Brazil	BRA	Middle and South America	2000-01-03

Taxonmaps

69479

Global distribution of 16S sequence HQ641452 (>99% sequence identity) for Stenotrophomonas from Microbeatlas

Aquatic Samples	10099
Soil Samples	6245
Animal Samples	29572
Plant Samples	2260
Total Samples	48176

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17917	1	Risk group (German classification) According to TRBA 466
121642	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2623620583 annotated assembly for Stenotrophomonas pavanii LMG 25348	scaffold	GCA_900101175	487698.5	2623620583	487698	74.62
66792	ASM143156v1 assembly for Stenotrophomonas pavanii DSM 25135	contig	GCA_001431565	487698.4	2740892494	487698	53.04

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
29715	Stenotrophomonas pavanii strain ICB 89 16S ribosomal RNA gene, partial sequence	FJ748683	1483	487698
17917	Stenotrophomonas pavanii strain LMG 25348 16S ribosomal RNA gene, partial sequence	HQ641452	1497	487698
124043	Stenotrophomonas pavanii strain LMG 25348 16S ribosomal RNA gene, partial sequence.	MN527021	492	487698
124043	Stenotrophomonas pavanii strain DSM 25135 16S ribosomal RNA gene, partial sequence.	MW111177	655	487698
124043	Stenotrophomonas pavanii culture DSM:25135 16S ribosomal RNA gene, partial sequence.	PP095701	1440	487698
124043	Stenotrophomonas pavanii strain LMG 25348 16S ribosomal RNA gene, partial sequence.	PV566943	1239	487698
124043	Stenotrophomonas pavanii strain LMG 25348 16S ribosomal RNA gene, partial sequence.	PV952975	791	487698
124043	Stenotrophomonas pavanii strain LMG 25348 16S ribosomal RNA gene, partial sequence.	PV544378	1481	487698
124043	Stenotrophomonas pavanii strain LMG 25348 U-SMWF-Fe2 16S ribosomal RNA gene, partial sequence.	KX778112	1413	487698
124043	Stenotrophomonas pavanii strain LMG 25348 U-SMWF-T10-8 16S ribosomal RNA gene, partial sequence.	KX778120	1411	487698

GC content

17917

GC-content (mol%)67.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2623620583 annotated assembly for Stenotrophomonas pavanii LMG 25348
NCBI: GCA_900101175

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.09	no
125439	motility	BacteriaNetⓘ	yes	78.64	no
125439	gram_stain	BacteriaNetⓘ	negative	94.56	no
125439	spore_formation	BacteriaNetⓘ	no	98.98	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Stenotrophomonas pavanii LMG 25348
NCBI: GCA_900101175.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.24	yes
125438	anaerobic	anaerobicⓘ	no	95.75	no
125438	aerobic	aerobicⓘ	yes	85.23	no
125438	spore-forming	spore-formingⓘ	no	90.39	yes
125438	thermophilic	thermophileⓘ	no	98.00	no
125438	flagellated	motile2+ⓘ	yes	76.44	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Draft genome sequences of Stenotrophomonas maltophilia strains UPSm1, UPSm3, and UPSm5 and Stenotrophomonas pavanii strain UPSm2.	Cobe BL, Ozer EA, Nozick SH, Hauser AR, Cianciotto NP.	Microbiol Resour Announc	10.1128/mra.00313-25	2025
	Draft Genome Sequence of Stenotrophomonas pavanii Strain MHSD12, a Bacterial Endophyte Associated with Dicoma anomala.	Maela MP, Serepa-Dlamini MH.	Microbiol Resour Announc	10.1128/mra.00550-20	2020
	The Antibacterial Activity of Crude Extracts of Secondary Metabolites from Bacterial Endophytes Associated with Dicoma anomala.	Makuwa SC, Serepa-Dlamini MH.	Int J Microbiol	10.1155/2021/8812043	2021
Metabolism	Detection of antibiotics synthetized in microfluidic picolitre-droplets by various actinobacteria.	Mahler L, Wink K, Beulig RJ, Scherlach K, Tovar M, Zang E, Martin K, Hertweck C, Belder D, Roth M.	Sci Rep	10.1038/s41598-018-31263-2	2018
	Stenotrophomonas pavanii AS1 and blue light synergistically enhance kinetin riboside biosynthesis and mercury tolerance in Oryza sativa	Palanisamy R, Subramanian SK, Kangeswaren M, Asiedu SK, K C, Ravi MS.	Chemosphere.		2025
	Stenotrophomonas pavanii AS1 and blue light synergistically enhance kinetin riboside biosynthesis and mercury tolerance in Oryza sativa.	Palanisamy R, Subramanian SK, Kangeswaren M, Asiedu SK, K C, Ravi MS.	Chemosphere	10.1016/j.chemosphere.2025.144532	2025
	Antibiotic resistance patterns of environmental bacteria from sewage water in Vellore, India: isolation, virulence analysis, and characterization.	Barnwal SK, Saleh AM.	Front Microbiol	10.3389/fmicb.2025.1640369	2025
	Enhanced degradation of polyethylene terephthalate (PET) microplastics by an engineered Stenotrophomonas pavanii in the presence of biofilm.	Huang QS, Chen SQ, Zhao XM, Song LJ, Deng YM, Xu KW, Yan ZF, Wu J.	Sci Total Environ	10.1016/j.scitotenv.2024.177129	2024
	Targeted aggregation of PETase towards surface of Stenotrophomonas pavanii for degradation of PET microplastics.	Chen SQ, Huang QS, Li Y, Wu J, Chen S, Yan ZF.	J Hazard Mater	10.1016/j.jhazmat.2024.135895	2024
Genetics	Transmission of carbapenem-resistant enterobacterales producing NDM-5 during the broiler breeding process in China.	Wu K, Zhang Y, Xu W, Lin X, Li C, Wang J, Li R, Tang Y, Lei C, Wang H.	Vet Microbiol	10.1016/j.vetmic.2024.110282	2024
	Isolation and characterization of Stenotrophomonas pavanii GXUN74707 with efficient flocculation performance and application in wastewater treatment.	Qin S, Li Q, Dou J, Man Y, Wu L, Tian H, Jiang M, Liu G.	Front Microbiol	10.3389/fmicb.2024.1367043	2024
	Multifarious characteristics of sulfur-oxidizing bacteria residing in rice rhizosphere.	Nyamath S, Subburamu K, Kalyanasundaram GT, Balachandar D, Suresh M, Anandham R.	Folia Microbiol (Praha)	10.1007/s12223-023-01080-w	2024
Phylogeny	Deciphering Bacterial Community Succession and Pathogen Dynamics in ICU Ventilator Circuits Through Full-Length 16S rRNA Sequencing for Mitigating the Risk of Nosocomial Infections.	Tsai HC, Chen JS, Hsu GJ, Hussain B, Lin IC, Hsu TK, Han J, Huang SW, Wu CC, Hsu BM.	Microorganisms	10.3390/microorganisms13091982	2025
	Accelerated biodegradation of polyethylene terephthalate by Thermobifida fusca cutinase mediated by Stenotrophomonas pavanii.	Huang QS, Yan ZF, Chen XQ, Du YY, Li J, Liu ZZ, Xia W, Chen S, Wu J.	Sci Total Environ	10.1016/j.scitotenv.2021.152107	2022
Pathogenicity	Anti-Rickettsial Activity of Chitosan, Selenium, and Silver Nanoparticles: Efficacy in Vero Cells.	Peresh YY, Spitalsky Z, Shaalan M, Spitalska E.	Pathogens	10.3390/pathogens14090885	2025
	Biofertilizer effect of some zinc dissolving bacteria free and encapsulated on Zea mays growth.	Sultan AAYA, Gebreel HM, Youssef HIA.	Arch Microbiol	10.1007/s00203-023-03537-5	2023
	Treatment of petroleum refinery sludge by petroleum degrading bacterium Stenotrophomonas pavanii IRB19 as an efficient novel technology.	Behera ID, Basak G, Kumar RR, Sen R, Meikap BC.	J Environ Sci Health A Tox Hazard Subst Environ Eng	10.1080/10934529.2020.1866924	2021
	The Cultured Microbiome of Pollinated Maize Silks Shifts after Infection with Fusarium graminearum and Varies by Distance from the Site of Pathogen Inoculation.	Thompson MEH, Shrestha A, Rinne J, Limay-Rios V, Reid L, Raizada MN.	Pathogens	10.3390/pathogens12111322	2023
	Gut bacteria of lepidopteran herbivores facilitate digestion of plant toxins.	Zhang N, Qian Z, He J, Shen X, Lei X, Sun C, Fan J, Felton GW, Shao Y.	Proc Natl Acad Sci U S A	10.1073/pnas.2412165121	2024
Genetics	Alginate and fucoidan changes the bacterial community in different directions and the alginate or fucoidan degrading bacteria isolated from paddy soil promotes the plant growth.	Yang SH, Seo J, Koo Y.	Arch Microbiol	10.1007/s00203-021-02480-7	2021
	Skin-Dwelling Bacteria Survive Preoperative Skin Preparation in Reconstruction Surgery.	Duffy HR, Ashton NN, Stulce P, Blair A, Farnsworth R, Ormiston L, Kwok AC, Williams DL.	J Clin Med	10.3390/jcm14103417	2025
Phylogeny	Endophytic Bacteria Associated with Medicinal Plant Vernonia anthelmintica: Diversity and Characterization.	Rustamova N, Wubulikasimu A, Mukhamedov N, Gao Y, Egamberdieva D, Yili A.	Curr Microbiol	10.1007/s00284-020-01924-5	2020
	Draft Genome Sequence of Multidrug-Resistant Stenotrophomonas pavanii BWK1, Isolated from Mareca penelope Feces.	Kenzaka T, Tani K.	Genome Announc	10.1128/genomea.00187-18	2018
Phylogeny	Comprehensive analysis of microbiome biodiversity in popular date palm (Phoenix dactylifera L.) fruit varieties.	Hamed KE, Alsaif AN, Alhewairini SS, Sayyed RZ.	Sci Rep	10.1038/s41598-024-71249-x	2024
Phylogeny	Improving the Diagnosis of Bacterial Infections: Evaluation of 16S rRNA Nanopore Metagenomics in Culture-Negative Samples.	Bouchiat C, Ginevra C, Benito Y, Gaillard T, Salord H, Dauwalder O, Laurent F, Vandenesch F.	Front Microbiol	10.3389/fmicb.2022.943441	2022
	In-Depth Characterization of Plant Growth Promotion Potentials of Selected Alkanes-Degrading Plant Growth-Promoting Bacterial Isolates.	Alotaibi F, St-Arnaud M, Hijri M.	Front Microbiol	10.3389/fmicb.2022.863702	2022
	Multiphase Biopolymers Enriched with Suberin Extraction Waste: Impact on Properties and Sustainable Development.	Wronka A, Kowaluk G.	Materials (Basel)	10.3390/ma17225472	2024
	Biodegradation of Polyhydroxybutyrate, Polylactide, and Their Blends by Microorganisms, Including Antarctic Species: Insights from Weight Loss, XRD, and Thermal Studies.	Skorokhoda V, Semeniuk I, Peretyatko T, Kochubei V, Ivanukh O, Melnyk Y, Stetsyshyn Y.	Polymers (Basel)	10.3390/polym17050675	2025
	Release and Disintegration Properties of Poly(lactic Acid) Films with Allyl Isothiocyanate-beta-Cyclodextrin Inclusion Complexes for Active Food Packaging.	Munoz-Shuguli C, Rodriguez-Mercado F, Guarda A, Galotto MJ, Jimenez A, Garrigos MC, Ramos M.	Molecules	10.3390/molecules29245859	2024
	The Effect of Applying Treatment Sludge and Vermicompost to Soil on the Biodegradability of Poly(lactic acid) and Poly(3-Hydroxybutyrate).	Erkul SN, Ucaroglu S.	Polymers (Basel)	10.3390/polym17030352	2025
	Soft rot disease alters soil characteristics and root-associated, culturable microbial community of Amorphophallus konjac	He F, Zhang Z, Cui M, Liu L, Xue Q.	J Gen Plant Pathol	10.1007/s10327-017-0759-y	2018
Phylogeny	Isolation and Identification of Bacterial Strains Colonizing the Surface of Biodegradable Polymers.	Esposito R, Federico S, Amato A, Viel T, Caramiello D, Macina A, Miralto M, Ambrosino L, Chiusano ML, Cocca M, Manfra L, Libralato G, Zupo V, Costantini M.	Microorganisms	10.3390/microorganisms13030609	2025
Genetics	A Novel Podophage StenR_269 Suggests a New Family in the Class Caudoviricetes.	Yakubovskij VI, Morozova VV, Kozlova YN, Tikunov AY, Babkin IV, Bardasheva AV, Zhirakovskaya EV, Baykov IK, Kaverina GB, Tikunova NV.	Viruses	10.3390/v15122437	2023
	Unraveling the mechanism of sulfur nutrition in pigeonpea inoculated with sulfur-oxidizing bacteria.	Malviya D, Varma A, Singh UB, Singh S, Saxena AK.	Front Microbiol	10.3389/fmicb.2022.927702	2022
Genetics	Combining Flow Cytometry and Metagenomics Improves Recovery of Metagenome-Assembled Genomes in a Cell Culture from Activated Sludge.	Abdulkadir N, Saraiva JP, Schattenberg F, Toscan RB, Borim Correa F, Harms H, Muller S, da Rocha UN.	Microorganisms	10.3390/microorganisms11010175	2023
	The phytopathogen Xanthomonas campestris senses and effluxes salicylic acid via a sensor HepR and an RND family efflux pump to promote virulence in host plants.	Song K, Li R, Cui Y, Chen B, Zhou L, Han W, Jiang BL, He YW.	mLife	10.1002/mlf2.12140	2024
Pathogenicity	Ammonia and beyond - biomarkers of hepatic encephalopathy.	Gallego JJ, Ballester MP, Fiorillo A, Casanova-Ferrer F, Lopez-Gramaje A, Urios A, Arenas YM, Rios MP, Durban L, Megias J, San-Miguel T, Benlloch S, Lluch P, Jalan R, Montoliu C.	Metab Brain Dis	10.1007/s11011-024-01512-7	2025
	The Microbiome of Fertilization-Stage Maize Silks (Style) Encodes Genes and Expresses Traits That Potentially Promote Survival in Pollen/Style Niches and Host Reproduction.	Thompson MEH, Raizada MN.	Microorganisms	10.3390/microorganisms12071473	2024
	Structural Rearrangements of Polylactide/Natural Rubber Composites during Hydro- and Biotic Degradation.	Tertyshnaya YV, Podzorova MV, Khramkova AV, Ovchinnikov VA, Krivandin AV.	Polymers (Basel)	10.3390/polym15081930	2023
	Vaginal Infections during Pregnancy Increase Breast Milk Microbiome Alpha Diversity and Alter Taxonomic Composition.	Nisaa AA, Oon CE, Sreenivasan S, Balakrishnan V, Rajendran D, Tan JJ, Roslan FF, Todorov SD, Jeong WS, Zhao F, Nasir NSM, Deris ZZ, Zhang H, Park YH, Liu G, Liong MT.	Prev Nutr Food Sci	10.3746/pnf.2023.28.1.1	2023
Pathogenicity	Prevalence and characterization of carbapenem-resistant bacteria in water bodies in the Los Angeles-Southern California area.	Harmon DE, Miranda OA, McCarley A, Eshaghian M, Carlson N, Ruiz C.	Microbiologyopen	10.1002/mbo3.692	2019
Metabolism	Combining amplicon sequencing and metabolomics in cirrhotic patients highlights distinctive microbiota features involved in bacterial translocation, systemic inflammation and hepatic encephalopathy.	Iebba V, Guerrieri F, Di Gregorio V, Levrero M, Gagliardi A, Santangelo F, Sobolev AP, Circi S, Giannelli V, Mannina L, Schippa S, Merli M.	Sci Rep	10.1038/s41598-018-26509-y	2018
	Identification and environment-friendly biocontrol potential of five different bacteria against Aphis punicae and Aphis illinoisensis (Hemiptera: Aphididae).	Baazeem A, Alotaibi SS, Khalaf LK, Kumar U, Zaynab M, Alharthi S, Darwish H, Alghamdi A, Jat SK, Al-Barty A, Albogami B, Noureldeen A, Ravindran B.	Front Microbiol	10.3389/fmicb.2022.961349	2022
Phylogeny	The Wheat Head Blight Pathogen Fusarium graminearum Can Recruit Collaborating Bacteria from Soil.	Ali H, Pei M, Li H, Fang W, Mao H, Khan HA, Nadeem T, Lu G, Olsson S.	Cells	10.3390/cells11193004	2022
	Stenotrophomonas in diversified cropping systems: friend or foe?	Kumar A, Rithesh L, Kumar V, Raghuvanshi N, Chaudhary K, Abhineet, Pandey AK.	Front Microbiol	10.3389/fmicb.2023.1214680	2023
Enzymology	Evaluation of Bioaerosol Bacterial Components of a Wastewater Treatment Plant Through an Integrate Approach and In Vivo Assessment.	Bruni E, Simonetti G, Bovone B, Casagrande C, Castellani F, Riccardi C, Pomata D, Di Filippo P, Federici E, Buiarelli F, Uccelletti D.	Int J Environ Res Public Health	10.3390/ijerph17010273	2019
	Function-Oriented Graphene Quantum Dots Probe for Single Cell in situ Sorting of Active Microorganisms in Environmental Samples.	Luo Y, Liu F, Song J, Luo Q, Yang Y, Mei C, Xu M, Liao B.	Front Microbiol	10.3389/fmicb.2021.659111	2021
	Alterations of the Oral Microbiome and Cumulative Carbapenem Exposure Are Associated With Stenotrophomonas maltophilia Infection in Patients With Acute Myeloid Leukemia Receiving Chemotherapy.	Aitken SL, Sahasrabhojane PV, Kontoyiannis DP, Savidge TC, Arias CA, Ajami NJ, Shelburne SA, Galloway-Pena JR.	Clin Infect Dis	10.1093/cid/ciaa778	2021
Genetics	Genomic Analysis of the Endophytic Stenotrophomonas Strain 169 Reveals Features Related to Plant-Growth Promotion and Stress Tolerance.	Ulrich K, Kube M, Becker R, Schneck V, Ulrich A.	Front Microbiol	10.3389/fmicb.2021.687463	2021
	NaCl Modifies Biochemical Traits in Bacterial Endophytes Isolated from Halophytes: Towards Salinity Stress Mitigation Using Consortia.	Barajas Gonzalez JA, de la Rosa YEK, Carrillo-Gonzalez R, Gonzalez-Chavez MDCA, Hidalgo Lara ME, Soto Hernandez RM, Herrera Cabrera BE.	Plants (Basel)	10.3390/plants13121626	2024
	Engineered Nanoparticles, Natural Nanoclay and Biochar, as Carriers of Plant-Growth Promoting Bacteria.	Pavlicevic M, Abdelraheem W, Zuverza-Mena N, O'Keefe T, Mukhtar S, Ridge G, Ranciato J, Haynes C, Elmer W, Pignatello J, Pagano L, Caldara M, Marmiroli M, Maestri E, Marmiroli N, White JC.	Nanomaterials (Basel)	10.3390/nano12244474	2022
	Taxonomic position, antibiotic resistance and virulence factor production by Stenotrophomonas isolates from patients with cystic fibrosis and other chronic respiratory infections.	Fluit AC, Bayjanov JR, Aguilar MD, Canton R, Elborn S, Tunney MM, Scharringa J, Benaissa-Trouw BJ, Ekkelenkamp MB.	BMC Microbiol	10.1186/s12866-022-02466-5	2022
	Soil Microbes Drive the Flourishing Growth of Plants From Leucocalocybe mongolica Fairy Ring.	Wang Q, Wang C, Wei Y, Yao W, Lei Y, Sun Y.	Front Microbiol	10.3389/fmicb.2022.893370	2022
	Bacterial Biofilm Thickness and Fungal Inhibitory Bacterial Richness Both Prevent Establishment of the Amphibian Fungal Pathogen Batrachochytrium dendrobatidis.	Chen MY, Alexiev A, McKenzie VJ.	Appl Environ Microbiol	10.1128/aem.01604-21	2022
Genetics	Quantitative real-time PCR assay for the rapid identification of the intrinsically multidrug-resistant bacterial pathogen Stenotrophomonas maltophilia.	Fraser TA, Bell MG, Harris PNA, Bell SC, Bergh H, Nguyen TK, Kidd TJ, Nimmo GR, Sarovich DS, Price EP.	Microb Genom	10.1099/mgen.0.000307	2019
	Current Situation of Antimicrobial Resistance and Genetic Differences in Stenotrophomonas maltophilia Complex Isolates by Multilocus Variable Number of Tandem Repeat Analysis.	Rhee JY, Song JH, Ko KS.	Infect Chemother	10.3947/ic.2016.48.4.285	2016
Genetics	Taxonogenomics reveal multiple novel genomospecies associated with clinical isolates of Stenotrophomonas maltophilia.	Patil PP, Kumar S, Midha S, Gautam V, Patil PB.	Microb Genom	10.1099/mgen.0.000207	2018
	PVC biodeterioration and DEHP leaching by DEHP-degrading bacteria.	Latorre I, Hwang S, Sevillano M, Montalvo-Rodriguez R.	Int Biodeterior Biodegradation	10.1016/j.ibiod.2011.12.011	2012
Enzymology	Molecular, biochemical and kinetic analysis of a novel, thermostable lipase (LipSm) from Stenotrophomonas maltophilia Psi-1, the first member of a new bacterial lipase family (XVIII).	Parapouli M, Foukis A, Stergiou PY, Koukouritaki M, Magklaras P, Gkini OA, Papamichael EM, Afendra AS, Hatziloukas E.	J Biol Res (Thessalon)	10.1186/s40709-018-0074-6	2018
	Antibiotic resistance patterns of environmental bacteria from sewage water in Vellore, India: isolation, virulence analysis, and characterization	Barnwal S, Saleh A.	Front Microbiol		2025
	Unveiling six novel bacterial strains for fipronil and thiobencarb biodegradation: efficacy, metabolic pathways, and bioaugmentation potential in paddy soil.	Faridy N, Torabi E, Pourbabaee AA, Osdaghi E, Talebi K.	Front Microbiol	10.3389/fmicb.2024.1462912	2024
	Growth Characteristics of Chlorella sorokiniana in a Photobioreactor during the Utilization of Different Forms of Nitrogen at Various Temperatures.	Ziganshina EE, Bulynina SS, Ziganshin AM.	Plants (Basel)	10.3390/plants11081086	2022
Phylogeny	Isolation and molecular identification of landfill bacteria capable of growing on di-(2-ethylhexyl) phthalate and deteriorating PVC materials.	Latorre I, Hwang S, Montalvo-Rodriguez R	J Environ Sci Health A Tox Hazard Subst Environ Eng	10.1080/10934529.2012.707549	2012
	Stenotrophomonas goyi sp. nov., a novel bacterium associated with the alga Chlamydomonas reinhardtii.	Torres MJ, Fakhimi N, Dubini A, Gonzalez-Ballester D.	F1000Res	10.12688/f1000research.134978.3	2023
	Stenotrophomonas tumulicola sp. nov., a major contaminant of the stone chamber interior in the Takamatsuzuka Tumulus.	Handa Y, Tazato N, Nagatsuka Y, Koide T, Kigawa R, Sano C, Sugiyama J.	Int J Syst Evol Microbiol	10.1099/ijsem.0.000843	2016
Phylogeny	Screening for endophytic nitrogen-fixing bacteria in Brazilian sugar cane varieties used in organic farming and description of Stenotrophomonas pavanii sp. nov.	Ramos PL, Van Trappen S, Thompson FL, Rocha RCS, Barbosa HR, De Vos P, Moreira-Filho CA	Int J Syst Evol Microbiol	10.1099/ijs.0.019372-0	2010
Phylogeny	Stenotrophomonas cyclobalanopsidis sp. nov., isolated from the leaf spot disease of Cyclobalanopsis patelliformis.	Bian DR, Xue H, Piao CG, Li Y	Antonie Van Leeuwenhoek	10.1007/s10482-020-01453-y	2020
Phylogeny	Stenotrophomonas bentonitica sp. nov., isolated from bentonite formations.	Sanchez-Castro I, Ruiz-Fresneda MA, Bakkali M, Kampfer P, Glaeser SP, Busse HJ, Lopez-Fernandez M, Martinez-Rodriguez P, Merroun ML	Int J Syst Evol Microbiol	10.1099/ijsem.0.002016	2017

References

#17917	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25135
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26098	IJSEM 926 2011 ( DOI 10.1099/ijs.0.019372-0 , PubMed 20495025 )
#29715	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26098
#62173	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59972
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121642	Collection of Institut Pasteur ; Curators of the CIP; CIP 111741
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Stenotrophomonas pavanii (CCUG 59972, DSM 25135, CBMAI 564)

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