Name: Stenotrophomonas acidaminiphila DSM 13117
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17557

Type strain:

Species: Stenotrophomonas acidaminiphila

Culture col. no.: DSM 13117, ATCC 700916, CIP 106456, CCUG 46887, LMG 22073, AMX 19, JCM 13310

Strain history: CIP 106456 <-- H. Macarie AMX 19.

NCBI tax ID(s): 128780 (species)

Other strains from Stenotrophomonas acidaminiphila

S. acidaminiphila DSM 13118, ATCC 700917, CCUG 54933, ...
S. acidaminiphila CCUG 17850
S. acidaminiphila CCUG 23629
S. acidaminiphila CCUG 26230, LMG 11051
S. acidaminiphila CCUG 60351
S. acidaminiphila CCUG 60352

Section

Stenotrophomonas acidaminiphila DSM 13117 is an aerobe, mesophilic bacterium that was isolated from industrial waste water.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Stenotrophomonas*
	Species	**Stenotrophomonas acidaminiphila**
	Full Scientific Name (PNU)	Stenotrophomonas acidaminiphila Assih et al. 2002

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4909]

Culture medium

TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)

[Ref.: #4909]

Culture medium growth

[Ref.: #4909]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #4909]

Culture medium composition

expand / minimize

[Ref.: #4909]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #4909]

Culture medium growth

[Ref.: #4909]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #4909]

Culture medium composition

expand / minimize

[Ref.: #39532]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #39532]

Culture medium growth

[Ref.: #39532]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #4909]	growth	35 °C
[Ref.: #39532]	growth	30 °C
[Ref.: #57384]	growth	30-37 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #4909]	Temperature range	mesophilic
[Ref.: #39532]	Temperature range	mesophilic
[Ref.: #57384]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #57384]

Oxygen tolerance

aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68369]		indole ChEBI	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #4909]	20762	+	-	-	-	-	+	+	-	-	-	+	-	+	+	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4909]	Sample type/isolated from	industrial waste water
[Ref.: #4909]	Country	Mexico
[Ref.: #4909]	Country ISO 3 Code	MEX
[Ref.: #4909]	Continent	North America

[Ref.: #57384]	Sample type/isolated from	Mud
[Ref.: #57384]	Sampling date	1999
[Ref.: #57384]	Country	Mexico
[Ref.: #57384]	Country ISO 3 Code	MEX
[Ref.: #57384]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Anaerobic sludge of a lab-scale UASB reactor
* marker position based on {}

Isolation sources categories

#Engineered

#Waste

#Industrial wastewater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF273080 (>99% sequence identity) for Stenotrophomonas sp. from Microbeatlas

Aquatic Samples	3113
Soil Samples	1383
Animal Samples	2568
Plant Samples	516
Total Samples	7580

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4909]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Stenotrophomonas acidaminiphila 16S ribosomal RNA gene, partial sequence	AF273080	1542	ENA	128780 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Stenotrophomonas acidaminiphila JCM 13310	GCA_001431595	contig	GenBank	128780 tax ID
[Ref.: #66792]	Stenotrophomonas acidaminiphila strain JCM 13310	128780.7	wgs	PATRIC	128780 tax ID	*
[Ref.: #66792]	Stenotrophomonas acidaminiphila JCM 13310	2713896760	draft	JGI IMG/M	128780 tax ID	*
[Ref.: #66792]	Stenotrophomonas acidaminiphila DSM 13117	GCA_024221815	contig	GenBank	128780 tax ID	*

[Ref.: #67770]

GC-content

66.4-67.4 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #4909]

Culture collection no.

DSM 13117, ATCC 700916, CIP 106456, CCUG 46887, LMG 22073, AMX 19, JCM 13310

[Ref.: #20218]

Associated Passport(s) in StrainInfo

163480, 118695, 303872

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Stenotrophomonas acidaminiphila sp. nov., a strictly aerobic bacterium isolated from an upflow anaerobic sludge blanket (UASB) reactor.	Assih EA, Ouattara AS, Thierry S, Cayol JL, Labat M, Macarie H	Int J Syst Evol Microbiol	10.1099/00207713-52-2-559	2002	*
Phylogeny	Stenotrophomonas daejeonensis sp. nov., isolated from sewage.	Lee M, Woo SG, Chae M, Shin MC, Jung HM, Ten LN	Int J Syst Evol Microbiol	10.1099/ijs.0.017780-0	2010	*

References

#4909

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13117

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39532 ; Curators of the CIP;
#57384 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 46887

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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