Name: Lysobacter ximonensis XM415
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17496

Type strain:

Species: Lysobacter ximonensis

Strain Designation: XM415

Culture col. no.: DSM 23410, CCTCC AB 207091, NRRL B-51263, CIP 110461

Strain history: CIP <- 2012, CCTCC

NCBI tax ID(s): 481520 (species)

SI-ID 407420

DSM 23410

Section

Lysobacter ximonensis XM415 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Lysobacter*
	Species	**Lysobacter ximonensis**
	Full Scientific Name (LPSN)	Lysobacter ximonensis Wang et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #32623]	Gram stain	negative
[Ref.: #123978]	Gram stain	negative

[Ref.: #32623]	Cell length	2 µm

[Ref.: #32623]	Cell width	0.5 µm

[Ref.: #32623]	Cell shape	rod-shaped
[Ref.: #123978]	Cell shape	rod-shaped

[Ref.: #32623]	Motility	yes
[Ref.: #123978]	Motility	no

[Ref.: #32623]	Flagellum arrangement	gliding

[Ref.: #32623]

Pigment production

yes

Multimedia content

[Ref.: #16849]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16849]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #16849]

Culture medium growth

[Ref.: #16849]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16849]

Culture medium composition

expand / minimize

[Ref.: #36216]

Culture medium

MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati

[Ref.: #36216]

Culture medium growth

[Ref.: #36216]

Culture medium composition

expand / minimize

[Ref.: #123978]

Culture medium

CIP Medium 566

[Ref.: #123978]

Culture medium growth

[Ref.: #123978]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #16849]	growth	28 °C
[Ref.: #32623]	growth	10-37 °C
[Ref.: #32623]	optimum	23.5 °C
[Ref.: #36216]	growth	30 °C

[Ref.: #16849]	Temperature range	mesophilic
[Ref.: #32623]	Temperature range	psychrophilic
[Ref.: #36216]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32623]			optimum	7.5
[Ref.: #32623]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32623]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32623]		NaCl		growth	0-1	%
[Ref.: #32623]		NaCl		optimum	0.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32623]	alanine ChEBI	+	carbon source
[Ref.: #32623]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #32623]	aspartate ChEBI	+	carbon source
[Ref.: #32623]	cellobiose ChEBI	+	carbon source
[Ref.: #32623]	dextrin ChEBI	+	carbon source
[Ref.: #32623]	esculin ChEBI	+	hydrolysis
[Ref.: #32623]	fructose ChEBI	+	carbon source
[Ref.: #32623]	glucose ChEBI	+	carbon source
[Ref.: #32623]	glutamate ChEBI	+	carbon source
[Ref.: #32623]	glycogen ChEBI	+	carbon source
[Ref.: #32623]	L-alaninamide ChEBI	+	carbon source
[Ref.: #32623]	maltose ChEBI	+	carbon source
[Ref.: #32623]	mannose ChEBI	+	carbon source
[Ref.: #32623]	methyl pyruvate ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32623]	acid phosphatase	+	3.1.3.2
[Ref.: #32623]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32623]	catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16849]	Sample type/isolated from	soil
[Ref.: #16849]	Geographic location (country and/or sea, region)	Tibet, Ximo
[Ref.: #16849]	Country	China
[Ref.: #16849]	Country ISO 3 Code	CHN
[Ref.: #16849]	Continent	Asia

[Ref.: #123978]	Sample type/isolated from	Environment, Soil sample
[Ref.: #123978]	Geographic location (country and/or sea, region)	Tibet
[Ref.: #123978]	Country	China
[Ref.: #123978]	Country ISO 3 Code	CHN
[Ref.: #123978]	Continent	Asia
[Ref.: #123978]	Isolation date	2008
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU237492 (>99% sequence identity) for Lysobacter ximonensis from Microbeatlas

Aquatic Samples	1229
Soil Samples	569
Animal Samples	348
Plant Samples	200
Total Samples	2346

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16849]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123978]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16849]	Lysobacter ximonensis strain XM415 16S ribosomal RNA gene, partial sequence	EU237492	1458	ENA	481520 tax ID

[Ref.: #16849]	GC-content	63.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32623]	GC-content	63.5 mol%

Availability in culture collections External links

[Ref.: #16849]

Culture collection no.

DSM 23410, CCTCC AB 207091, NRRL B-51263, CIP 110461

[Ref.: #86493]

SI-ID 407420

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lysobacter silvestris sp. nov., isolated from alpine forest soil, and reclassification of Luteimonas tolerans as Lysobacter tolerans comb. nov.	Margesin R, Zhang DC, Albuquerque L, Froufe HJC, Egas C, da Costa MS	Int J Syst Evol Microbiol	10.1099/ijsem.0.002710	2018	*
Phylogeny	Lysobacter ximonensis sp. nov., isolated from soil.	Wang Y, Dai J, Zhang L, Luo X, Li Y, Chen G, Tang Y, Meng Y, Fang C	Int J Syst Evol Microbiol	10.1099/ijs.0.65796-0	2009	*

References

#16849

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23410

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32623

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28834 (see below)

#36216 ; Curators of the CIP;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86493

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407420.1 )

#123978 Collection of Institut Pasteur ; Curators of the CIP; CIP 110461

#28834

IJSEM 786 2009 ( DOI 10.1099/ijs.0.65796-0 , PubMed 19329607 )

* These data were automatically processed and therefore are not curated

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