Name: Luteimonas terricola BZ92r
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17473

Type strain:

Species: Luteimonas terricola

Strain Designation: BZ92r

Culture col. no.: DSM 22344, CGMCC 1.8985, CIP 110133

Strain history: CIP <- 2010, R. Margesin, Innsbruck Univ., Innsbruck, Austria: strain BZ92r

NCBI tax ID(s): 645597 (species)

SI-ID 370200

CGMCC 1.8985, DSM 22344, CIP 110133

Section

Luteimonas terricola BZ92r is an aerobe, mesophilic, Gram-negative bacterium that was isolated from hydrocarbon-contaminated soil.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Luteimonas*
	Species	**Luteimonas terricola**
	Full Scientific Name (LPSN)	Luteimonas terricola Zhang et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29544]	Gram stain	negative
[Ref.: #123472]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.984

[Ref.: #29544]	Cell length	1.8-2.2 µm

[Ref.: #29544]	Cell width	0.6-0.8 µm

[Ref.: #29544]	Cell shape	rod-shaped
[Ref.: #123472]	Cell shape	rod-shaped

[Ref.: #29544]	Motility	no
[Ref.: #123472]	Motility	no

[Ref.: #29544]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16303]

Culture medium

REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b)

[Ref.: #16303]

Culture medium growth

[Ref.: #16303]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16303]

Culture medium composition

expand / minimize

[Ref.: #37925]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #37925]

Culture medium growth

[Ref.: #37925]

Culture medium composition

expand / minimize

[Ref.: #123472]

Culture medium

CIP Medium 566

[Ref.: #123472]

Culture medium growth

[Ref.: #123472]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #123472]

Culture medium

CIP Medium 72

[Ref.: #123472]

Culture medium growth

[Ref.: #123472]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #16303]	growth	25 °C
[Ref.: #29544]	growth	01-25 °C
[Ref.: #29544]	optimum	10-15 °C
[Ref.: #37925]	growth	25 °C

[Ref.: #16303]	Temperature range	mesophilic
[Ref.: #29544]	Temperature range	psychrophilic
[Ref.: #37925]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29544]			optimum	7
[Ref.: #29544]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29544]

Oxygen tolerance

aerobe

[Ref.: #29544]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.988

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29544]		NaCl		growth	0-3	%
[Ref.: #29544]		NaCl		optimum	0-3	%

[Ref.: #29544]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29544]	nitrate ChEBI	+	reduction
[Ref.: #123472]	nitrate ChEBI	-	reduction
[Ref.: #123472]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #123472]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #29544]	catalase	+	1.11.1.6
[Ref.: #123472]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #29544]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123472]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #123472]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123472]	12386	-	+	+	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16303]	Sample type/isolated from	hydrocarbon-contaminated soil
[Ref.: #16303]	Geographic location (country and/or sea, region)	South Tyrol, Bozen
[Ref.: #16303]	Country	Italy
[Ref.: #16303]	Country ISO 3 Code	ITA
[Ref.: #16303]	Continent	Europe

[Ref.: #123472]	Sample type/isolated from	Environment, Soil
[Ref.: #123472]	Geographic location (country and/or sea, region)	Tyrol
[Ref.: #123472]	Country	Italy
[Ref.: #123472]	Country ISO 3 Code	ITA
[Ref.: #123472]	Continent	Europe
[Ref.: #123472]	Isolation date	2008
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ948107 (>99% sequence identity) for Luteimonas terricola subclade from Microbeatlas

Aquatic Samples	135
Soil Samples	541
Animal Samples	682
Plant Samples	50
Total Samples	1408

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16303]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123472]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16303]	Luteimonas terricola strain BZ92r 16S ribosomal RNA gene, partial sequence	FJ948107	1537	ENA	645597 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Luteimonas terricola BZ92r	GCA_004352845	contig	GenBank	645597 tax ID	*
[Ref.: #66792]	Luteimonas terricola CGMCC 1.8985	GCA_014645675	contig	GenBank	645597 tax ID	*
[Ref.: #66792]	Luteimonas terricola strain CGMCC 1.8985	645597.4	wgs	PATRIC	645597 tax ID	*
[Ref.: #66792]	Luteimonas terricola BZ92r	2897465725	draft	JGI IMG/M	645597 tax ID	*

[Ref.: #16303]	GC-content	72.0 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #29544]	GC-content	72 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Luteimonas terricola strain CGMCC 1.8985 PATRIC: 645597.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Luteimonas terricola strain CGMCC 1.8985 PATRIC: 645597.4
[Ref.: #69480]	gram-positive	no	98.545	yes
[Ref.: #69480]	anaerobic	no	98.539	yes
[Ref.: #69480]	halophile	no	91.32	no
[Ref.: #69480]	spore-forming	no	95.796	yes
[Ref.: #69480]	glucose-util	yes	83.051	no
[Ref.: #69480]	flagellated	no	95.415	no
[Ref.: #69480]	aerobic	yes	91.077	yes
[Ref.: #69480]	thermophile	no	97.153	yes
[Ref.: #69480]	motile	no	77.117	yes
[Ref.: #69480]	glucose-ferment	no	90.584	no

Availability in culture collections External links

[Ref.: #16303]

Culture collection no.

DSM 22344, CGMCC 1.8985, CIP 110133

[Ref.: #86469]

SI-ID 370200

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Luteimonas granuli sp. nov., Isolated from Granules of the Wastewater Treatment Plant.	Siddiqi MZ, Yeon JM, Choi H, Lee JH, Kim SY, Wee JH, Im WT	Curr Microbiol	10.1007/s00284-020-02066-4	2020	*
Phylogeny	Luteimonas yindakuii sp. nov. isolated from the leaves of Dandelion (Taraxacum officinale) on the Qinghai-Tibetan Plateau.	Zhang S, Wang X, Yang J, Lu S, Lai XH, Jin D, Pu J, Li J, Huang Y, Zhang G, Zhu W, Huang Y, Tian Z, Zhou J, Dong K, Lei W, Ren Z, Wang S, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003863	2020	*
Phylogeny	Luteimonas padinae sp. nov., an epiphytic bacterium isolated from an intertidal macroalga.	Verma A, Ojha AK, Kumari P, Sundharam SS, Mayilraj S, Krishnamurthi S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001539	2016	*
Phylogeny	Luteimonas terricola sp. nov., a psychrophilic bacterium isolated from soil.	Zhang DC, Liu HC, Xin YH, Zhou YG, Schinner F, Margesin R	Int J Syst Evol Microbiol	10.1099/ijs.0.015537-0	2009	*

References

#16303

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22344

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29544

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25940 (see below)

#37925 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86469

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID370200.1 )

#123472 Collection of Institut Pasteur ; Curators of the CIP; CIP 110133

#25940

IJSEM 1581 2010 ( DOI 10.1099/ijs.0.015537-0 , PubMed 19684321 )

* These data were automatically processed and therefore are not curated

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Luteimonas terricola strain CGMCC 1.8985

Luteimonas terricola strain CGMCC 1.8985

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