Luteibacter yeojuensis (CCUG 57695, KACC 11405, DSM 17673)

Name: Luteibacter yeojuensis (CCUG 57695, KACC 11405, DSM 17673)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17464

Type strain

Strain Designation R2A 16-10

Culture col. no. CCUG 57695 KACC 11405 DSM 17673 R2A 16-10

NCBI tax ID(s) 345309

Special Collections DSMZ CCUG

History <- S. W. Kwon, KACC <- H.-Y. Weon

Links

Luteibacter yeojuensis R2A 16-10 is an aerobe, mesophilic prokaryote that was isolated from soil.

aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 297174

DSM 17673,KACC 11405,CCUG 57695

@ref 20215

Last LPSN update 2026-02-09 11:22:14

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Rhodanobacteraceae

Genus Luteibacter

Species Luteibacter yeojuensis

Full scientific name Luteibacter yeojuensis (Kim et al. 2006) Kämpfer et al. 2009

Synonyms (1)

Dyella yeojuensis

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	97.9
125438	negative	98.986

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7115	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7115	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
7115	aerobe
61422	aerobe
125439	obligate aerobe	95.7

Spore formation

@ref	Spore formation	Confidence
125439		97.9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7115	soil	Yeoju	Republic of Korea	KOR	Asia
61422	Soil,greenhouse	Yeoju region	Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7115	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1174287v1 assembly for Luteibacter yeojuensis DSM 17673	contig	GCA_011742875	345309.27	2995561029	345309	78.5

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7115	Dyella yeojuensis strain R2A16-10 16S ribosomal RNA gene, partial sequence	DQ181549	1478		345309

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Luteibacter yeojuensis DSM 17673
NCBI: GCA_011742875

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.90	no
125439	motility	BacteriaNetⓘ	yes	80.10	no
125439	gram_stain	BacteriaNetⓘ	negative	97.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Luteibacter yeojuensis strain DSM 17673
PATRIC: 345309.27

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.99	no
125438	anaerobic	anaerobicⓘ	no	98.67	yes
125438	spore-forming	spore-formingⓘ	no	85.45	no
125438	aerobic	aerobicⓘ	yes	84.40	no
125438	thermophilic	thermophileⓘ	no	97.49	yes
125438	flagellated	motile2+ⓘ	yes	70.81	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Description of Luteibacter aegosomatis sp. nov., Luteibacter aegosomaticola sp. nov., and Luteibacter aegosomatissinici sp. nov. isolated from the Intestines of Aegosoma sinicum Larvae.	Joe HI, Choi JW, Lee JY, Sung H, Jeong SW, Jeong YS, Lee JY, Bae JW.	J Microbiol	10.1007/s12275-023-00051-7	2023
Phylogeny	Luteibacter jiangsuensis sp. nov.: a methamidophos-degrading bacterium isolated from a methamidophos-manufacturing factory.	Wang L, Wang GL, Li SP, Jiang JD	Curr Microbiol	10.1007/s00284-010-9707-1	2010
Phylogeny	Luteibacter anthropi sp. nov., isolated from human blood, and reclassification of Dyella yeojuensis Kim et al. 2006 as Luteibacter yeojuensis comb. nov.	Kampfer P, Lodders N, Falsen E	Int J Syst Evol Microbiol	10.1099/ijs.0.009100-0	2009
Phylogeny	Dyella ginsengisoli sp. nov., isolated from soil of a ginseng field in South Korea.	Jung HM, Ten LN, Kim KH, An DS, Im WT, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64514-0	2009
Phylogeny	Dyella yeojuensis sp. nov., isolated from greenhouse soil in Korea.	Kim BY, Weon HY, Lee KH, Seok SJ, Kwon SW, Go SJ, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.64175-0	2006

References

#7115	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17673
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#61422	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57695
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Luteibacter yeojuensis (CCUG 57695, KACC 11405, DSM 17673)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_011742875

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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