Dyella ginsengisoli (DSM 18387, KCTC 12599, Gsoil 3046)

Name: Dyella ginsengisoli (DSM 18387, KCTC 12599, Gsoil 3046)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17455

Type strain

Culture col. no. DSM 18387 KCTC 12599 Gsoil 3046

NCBI tax ID(s) 363848

Special Collections DSMZ KCTC Literature strains

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Dyella ginsengisoli DSM 18387 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from soil of ginseng field.

Gram-negative motile rod-shaped aerobe mesophilic 16S sequence

Name and taxonomic classification

SI-ID 291602

LMG 23724,DSM 18387,KCTC 12599

@ref 20215

Last LPSN update 2025-12-16 09:51:06

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Rhodanobacteraceae

Genus Dyella

Species Dyella ginsengisoli

Full scientific name Dyella ginsengisoli Jung et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
31846	negative	1.5-2.1 µm	0.2-0.5 µm	rod-shaped
67771	negative

Pigmentation

31846

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7368	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7368	positive	growth	30	mesophilic
31846	positive	growth	15-42
31846	positive	optimum	28.5	mesophilic
67771	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH
31846	positive	optimum	6.75
31846	positive	growth	5.0-8.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31846	aerobe
67771	aerobe

Spore formation

31846

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31846	NaCl	positive	growth	0-2 %
31846	NaCl	positive	optimum	1 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31846	37054 ChEBI	3-hydroxybutyrate	+	carbon source
31846	30089 ChEBI	acetate	+	carbon source
31846	17057 ChEBI	cellobiose	+	carbon source
31846	4853 ChEBI	esculin	+	hydrolysis
31846	5291 ChEBI	gelatin	+	carbon source
31846	17234 ChEBI	glucose	+	carbon source
31846	29987 ChEBI	glutamate	+	carbon source
31846	28087 ChEBI	glycogen	+	carbon source
31846	17306 ChEBI	maltose	+	carbon source
31846	37684 ChEBI	mannose	+	carbon source
31846	506227 ChEBI	N-acetylglucosamine	+	carbon source
31846	27082 ChEBI	trehalose	+	carbon source
31846	31011 ChEBI	valerate	+	carbon source
31846	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31846	alkaline phosphatase	+	3.1.3.1
31846	alpha-galactosidase	+	3.2.1.22
31846	catalase	+	1.11.1.6
31846	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7368	soil of ginseng field	Pocheon Province	Republic of Korea	KOR	Asia
67771	From soil from a ginseng field in Pocheon Province		Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7368	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7368	Dyella ginsengisoli gene for 16S rRNA, partial sequence, strain: Gsoil 3046	AB245367	1491		363848

GC content

7368

GC-content (mol%)66.6

Genome-based predictions

Literature

Title	Authors	Journal	DOI	Year
Microbiome diversity across physicochemical gradient in low-medium enthalpy springs at the Sierra Madre Oriental eastern flank, northeastern Mexico.	Juarez-Aragon MC, Pantoja-Irys JR, de la Rosa-Manzano E, Garrido-Olvera L, Mujica-Sanchez H, Trejo-De Leon CR, Vazquez-Lobo A.	Front Microbiol	10.3389/fmicb.2025.1663000	2025
Dual Screen for Metal-Tolerant Metallophore Producers Evaluated with Soil from the Carpenter Snow Creek Site, a Heavy-Metal-Toxified Site in Montana.	Ahmed MMA, Hammers C, Boudreau PD.	ACS Omega	10.1021/acsomega.4c07306	2024
The profile of the soil microbiota in the Cerrado is influenced by land use.	de Souza LC, Procopio L.	Appl Microbiol Biotechnol	10.1007/s00253-021-11377-w	2021
VagiBIOM Lactobacillus suppository improves vaginal health index in perimenopausal women with bacterial vaginosis: a randomized control trial.	Vivekanandan V, Khan ZH, Venugopal G, Musunuru B, Mishra P, Srivastava S, Ramadass B, Subhadra B.	Sci Rep	10.1038/s41598-024-53770-1	2024
Promiscuous esterase activities of the C-C hydrolases from Dyella ginsengisoli.	Zhou H, Qu Y, Kong C, Wu Y, Zhu K, Yang J, Zhou J.	Biotechnol Lett	10.1007/s10529-012-0880-0	2012
Phylogenomics insights into order and families of Lysobacterales.	Kumar S, Bansal K, Patil PP, Patil PB.	Access Microbiol	10.1099/acmi.0.000015	2019
Isolation and characteristics of a novel biphenyl-degrading bacterial strain, Dyella ginsengisoli LA-4.	Li A, Qu Y, Zhou J, Gou M.	J Environ Sci (China)	10.1016/s1001-0742(08)62253-6	2009
Potential plant growth promoting traits and bioacidulation of rock phosphate by thiosulfate oxidizing bacteria isolated from crop plants.	Anandham R, Gandhi PI, Madhaiyan M, Sa T.	J Basic Microbiol	10.1002/jobm.200700380	2008
Biodegradation of phenanthrene and pyrene from mangrove sediment in subtropical Taiwan.	Chang BV, Chang IT, Yuan SY.	J Environ Sci Health A Tox Hazard Subst Environ Eng	10.1080/10934520701792688	2008
Biodiversity of active and inactive bacteria in the gut flora of wood-feeding huhu beetle larvae (Prionoplus reticularis).	Reid NM, Addison SL, Macdonald LJ, Lloyd-Jones G.	Appl Environ Microbiol	10.1128/aem.05609-11	2011
Screening of Tomato Seed Bacterial Endophytes for Antifungal Activity Reveals Lipopeptide Producing Bacillus siamensis Strain NKIT9 as a Potential Bio-Control Agent.	Sharma A, Kaushik N, Sharma A, Bajaj A, Rasane M, Shouche YS, Marzouk T, Djebali N.	Front Microbiol	10.3389/fmicb.2021.609482	2021
Dynamics of seed-borne rice endophytes on early plant growth stages.	Hardoim PR, Hardoim CC, van Overbeek LS, van Elsas JD.	PLoS One	10.1371/journal.pone.0030438	2012
Characterization of the bacterial community associated with larvae and adults of Anoplophora chinensis collected in Italy by culture and culture-independent methods.	Rizzi A, Crotti E, Borruso L, Jucker C, Lupi D, Colombo M, Daffonchio D.	Biomed Res Int	10.1155/2013/420287	2013
Molecular evolution of cytochrome bd oxidases across proteobacterial genomes.	Degli Esposti M, Rosas-Perez T, Servin-Garciduenas LE, Bolanos LM, Rosenblueth M, Martinez-Romero E.	Genome Biol Evol	10.1093/gbe/evv032	2015
Runella salmonicolor sp. nov. and Dyella lutea sp. nov., isolated from paddy field soil.	Park S, Kim I, Chhetri G, So Y, Jung Y, Woo H, Seo T.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005938	2023
Dyella marensis sp. nov., isolated from cliff soil.	Lee DW, Lee SD.	Int J Syst Evol Microbiol	10.1099/ijs.0.000968-0	2009
Dyella humi sp. nov., isolated from forest soil.	Chen MH, Lv YY, Wang J, Tang L, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001358	2016
Rhodanobacter koreensis sp. nov., a bacterium isolated from tomato rhizosphere.	Won K, Singh H, Ngo HTT, Son H, Kook M, Kim KY, Yi TH	Int J Syst Evol Microbiol	10.1099/ijs.0.000077	2015
Rhodanobacter panaciterrae sp. nov., a bacterium with ginsenoside-converting activity isolated from soil of a ginseng field.	Wang L, An DS, Kim SG, Jin FX, Lee ST, Im WT	Int J Syst Evol Microbiol	10.1099/ijs.0.025718-0	2011
Dyella soli sp. nov. and Dyella terrae sp. nov., isolated from soil.	Weon HY, Anandham R, Kim BY, Hong SB, Jeon YA, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.004838-0	2009
Dyella ginsengisoli sp. nov., isolated from soil of a ginseng field in South Korea.	Jung HM, Ten LN, Kim KH, An DS, Im WT, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64514-0	2009

References

#7368	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18387
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#31846	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28110 (see below)
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Dyella ginsengisoli (DSM 18387, KCTC 12599, Gsoil 3046)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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